PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G023400.3
Common NamePOPTR_0010s02410g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 380aa    MW: 42412 Da    PI: 10.0124
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G023400.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.7e-094678337
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                         W +eE e++++a +++G++ W+++a+ +  +R+ 
  Potri.010G023400.3 46 QWGKEELEQFYKAYRKHGKD-WEKVAAVVR-NRSV 78
                        6*****************99.********9.9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.62E-104192IPR009057Homeodomain-like
PROSITE profilePS5129310.0424293IPR017884SANT domain
SMARTSM007174.0E-54391IPR001005SANT/Myb domain
PfamPF002499.2E-84680IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-44678IPR009057Homeodomain-like
CDDcd001677.15E-64789No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MAPSRKRSVN KRYSNIDEVS PNKNAAEIAN KSRPRKRKLS KMLGPQWGKE ELEQFYKAYR  60
KHGKDWEKVA AVVRNRSVGM VEALYTMNKA YLSLPKGFAS GAGLIAMMTD HYSNLGESDS  120
ELESNGGTGP SQKPQKRARV TKGSEAPPVL DLLQSQPAAS NYGCLSLLKK RRSGSKPWAV  180
GKRTPRVPVT YSHDKDNEKY VSPIWQGMKV KADAVDDDVA HEIALALTEA SQRGGSPQVS  240
QTPKRKTKTP SPAQHDELMH PESEMMSAKL RGSEMDEVGC ELSLGSTDAY GGDYARDRIF  300
WKGRRYHGRR SLEVEENLDN HLDDVREACS GTEEGQKLEA VEEKFEMEVA YSKLVRSSKG  360
SRKRSKKVLF GEVFIWLSR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13338PRKRKL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269|PubMed:15246533}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G023400.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006378110.20.0protein ALWAYS EARLY 3 isoform X2
SwissprotQ6A3324e-93ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBLA0A3N7FL220.0A0A3N7FL22_POPTR; Uncharacterized protein
STRINGPOPTR_0010s02410.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.21e-86DNA binding
Publications ? help Back to Top
  1. Pfaff C, et al.
    ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development.
    Plant Physiol., 2018. 177(1): p. 226-240
    [PMID:29540591]