PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G022500.1
Common NamePOPTR_0010s02320g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 457aa    MW: 48780.5 Da    PI: 8.5307
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G022500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.73.1e-115174427
                        ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                          C++++rtG+C yG+rC+++H++
  Potri.010G022500.1 51 QDCMYYLRTGFCGYGARCRYNHPR 74
                        68********************96 PP
2zf-CCCH42.21.4e-1396120327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++lC++++rtGtCk+G++Ck++H++
  Potri.010G022500.1  96 QPLCQYYMRTGTCKFGASCKYNHPK 120
                         79*********************96 PP
3zf-CCCH35.71.5e-11140166127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C ++ +tG+Ck+G++CkF+H++
  Potri.010G022500.1 140 PGERECTYYIKTGQCKFGATCKFHHPQ 166
                         5789*********************97 PP
4zf-CCCH33.95.5e-11302328127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C+++++tG Ck+ ++C+++H+p
  Potri.010G022500.1 302 PGQPECQYYMKTGDCKFESSCRYHHPP 328
                         5789*********************97 PP
5zf-CCCH27.84.5e-09351374427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         + C ++ + G+Ck+G+ CkF H++
  Potri.010G022500.1 351 PTCTHYTQHGQCKFGPACKFDHPM 374
                         78********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.6E-64774IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4934775IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-64976IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-95074IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-55374IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-793120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.03293121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-696120IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-1196120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-698119IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4139166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.934139167IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-8141166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6142167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4145165IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5301328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.253301329IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-8303328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-5305328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4307328IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-5347374IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.324347375IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5351377IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-7351374IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-4353372IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MDRYGRGQEG SQSDPAQEWT GSGQETGLEE GVWQLEIGET ESEYPERPNE QDCMYYLRTG  60
FCGYGARCRY NHPRDRTAVL GAARAGGGEF PERVGQPLCQ YYMRTGTCKF GASCKYNHPK  120
QGGSSVRPVS LNYYGYPLRP GERECTYYIK TGQCKFGATC KFHHPQPANM QIPAQSLAPQ  180
VASVPAHTLY PTMQSPSVPS SQQYGVMVAR PPLLPGSYVQ GPYGPVLLSP SLVPYPSWSP  240
YPAPVSPVAS PNAQPAVGSG SVYGISPLSP SAPAYTGAYQ SIPTAKGPSS SSQKEHVFPE  300
RPGQPECQYY MKTGDCKFES SCRYHHPPEL VTSKTNVVLS PMGLPLRPGA PTCTHYTQHG  360
QCKFGPACKF DHPMGTLSYS PSASSLADMP VAPYPVGSSI GTLAPSSSSS DMRSKPSKDS  420
SSTRLSSSTS TPSGSVGSKY SKSGPASHSS VQKSGP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G022500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826691e-104AC182669.2 Populus trichocarpa clone Pop1-21I14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314462.10.0zinc finger CCCH domain-containing protein 34
SwissprotQ6NPN31e-167C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLB9HSD60.0B9HSD6_POPTR; Uncharacterized protein
STRINGPOPTR_0010s02320.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Representative plantOGRP28651131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-146C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]