PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.010G019600.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB_related

Protein Properties

Length: 1097aa MW: 119557 Da PI: 4.5365

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.010G019600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.7	1.7e-10	945	987	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++++ el++++++q+G++ + I + ++ gRt+ q+k+++ k Potri.010G019600.1 945 SRWSKQDTELFYEGIQQFGTD-LSMIQQLFP-GRTRHQVKLKYKK 987 59*****************.*****.*********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	2.3E-27	937	1019	No hit	No description
PROSITE profile	PS51293	10.655	942	990	IPR017884	SANT domain
SMART	SM00717	1.7E-7	943	991	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.24E-10	945	993	IPR009057	Homeodomain-like
CDD	cd00167	1.86E-6	946	987	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.9E-6	946	987	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1097 aa Download sequence Send to blast
MDPDLDPFDD ILPKPALTNA RLGGKFQPKA KPRPKKVEFV PIPFPPSKAK EKAVAASQTS 60 LDTNISVQPF GIMDEKLTCQ IGSLSPSSPT GTKEPLKSND GKTKLVEESG SPLATSDMVG 120 VKEPLKYKEG LSSWEIGSLE AANLSPARIN DAGSVGAMDS EAAISGCNDD QESSFVKSAG 180 VAGSLGFDSD LLDDILPKSL KNNSRAGGKF KPKAKPRQRN ENPAPVSSSP SKCAKEEPKA 240 HSQQTQSTEP VDVANTRMNP DGPTLLQQGN VKSNEPSKDS EILYFNDNSC MELVNPSSEN 300 IATEEDVSPQ NTLLAEMKSG NDVGLNSRLV ESAIEVGSMR LDLDAFDYMD PQPAISTGRA 360 AGKLQSKVKA RPRKGTSELA ASAVPNTAVE KVAGLASTVL DNMLPVESSG VENGRLTDHV 420 SEPNMESAGT KEPGRNNGQA LLSPPEILAT VFCQKDSKGK SSFPAQNFVD SSAFMKCNVV 480 ATDFSSPNEA AVQVDNGRLE LEESGAFPGL ETPGFLSPDV MESVMAPPPN VQPVPSETIN 540 IDGFSVAAFP SDNIVDSPCT HLGDFIPSDP CTSEIRMNQE LKNLTETSRS DNVTAIHQED 600 ASDLPEKETS SSRKRKAAPV SCSSWKSQKA SLAGDMNEHD KSSRRLTKQA AAPQLGDEPE 660 YEAHGNDDSS MHPGDFLPFD PCTSEFQVDQ NQKDFTESNC LANANVVRSE DVPVVPEKES 720 SKSGKRKVFS ASNCSRKSKK SSLAAGPQVV DELDEAHDNG GLPEAPGSSV DEEDNDYEPR 780 GDEESDDENK VEIASRKKRA SKKSKEPVTE NEKPVRKRNR SNDTAEQSMQ KPGKKFSHST 840 RRNKRCVNKD LLNMPEDEID FKRLPIRDII LFAEYKERLA TTTSKIPPNN QSTDNPFHGE 900 YSHNEEDGFA SEQDITHGDD QTYVRAQPSS SLFNYQSFMD RAPNSRWSKQ DTELFYEGIQ 960 QFGTDLSMIQ QLFPGRTRHQ VKLKYKKEER QHPLRLHEAL SSRPKDNSYF EKLIEQLQEV 1020 AGTQEEQESY KDDLVDVSGE EDAELNAETS GEVTKPEQGE NAGVEEEQEE NVAEDHHGPL 1080 KSGVSDEDVD DIWGSY*

Sequence ? help Back to Top

Protein Sequence Length: 1097 aa Download sequence Send to blast

MDPDLDPFDD ILPKPALTNA RLGGKFQPKA KPRPKKVEFV PIPFPPSKAK EKAVAASQTS  60
LDTNISVQPF GIMDEKLTCQ IGSLSPSSPT GTKEPLKSND GKTKLVEESG SPLATSDMVG  120
VKEPLKYKEG LSSWEIGSLE AANLSPARIN DAGSVGAMDS EAAISGCNDD QESSFVKSAG  180
VAGSLGFDSD LLDDILPKSL KNNSRAGGKF KPKAKPRQRN ENPAPVSSSP SKCAKEEPKA  240
HSQQTQSTEP VDVANTRMNP DGPTLLQQGN VKSNEPSKDS EILYFNDNSC MELVNPSSEN  300
IATEEDVSPQ NTLLAEMKSG NDVGLNSRLV ESAIEVGSMR LDLDAFDYMD PQPAISTGRA  360
AGKLQSKVKA RPRKGTSELA ASAVPNTAVE KVAGLASTVL DNMLPVESSG VENGRLTDHV  420
SEPNMESAGT KEPGRNNGQA LLSPPEILAT VFCQKDSKGK SSFPAQNFVD SSAFMKCNVV  480
ATDFSSPNEA AVQVDNGRLE LEESGAFPGL ETPGFLSPDV MESVMAPPPN VQPVPSETIN  540
IDGFSVAAFP SDNIVDSPCT HLGDFIPSDP CTSEIRMNQE LKNLTETSRS DNVTAIHQED  600
ASDLPEKETS SSRKRKAAPV SCSSWKSQKA SLAGDMNEHD KSSRRLTKQA AAPQLGDEPE  660
YEAHGNDDSS MHPGDFLPFD PCTSEFQVDQ NQKDFTESNC LANANVVRSE DVPVVPEKES  720
SKSGKRKVFS ASNCSRKSKK SSLAAGPQVV DELDEAHDNG GLPEAPGSSV DEEDNDYEPR  780
GDEESDDENK VEIASRKKRA SKKSKEPVTE NEKPVRKRNR SNDTAEQSMQ KPGKKFSHST  840
RRNKRCVNKD LLNMPEDEID FKRLPIRDII LFAEYKERLA TTTSKIPPNN QSTDNPFHGE  900
YSHNEEDGFA SEQDITHGDD QTYVRAQPSS SLFNYQSFMD RAPNSRWSKQ DTELFYEGIQ  960
QFGTDLSMIQ QLFPGRTRHQ VKLKYKKEER QHPLRLHEAL SSRPKDNSYF EKLIEQLQEV  1020
AGTQEEQESY KDDLVDVSGE EDAELNAETS GEVTKPEQGE NAGVEEEQEE NVAEDHHGPL  1080
KSGVSDEDVD DIWGSY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	725	739	RKVFSASNCSRKSKK
2	797	805	KRASKKSKE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.010G019600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214213	0.0	AC214213.1 Populus trichocarpa clone POP024-E15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024466753.1	0.0	uncharacterized protein LOC7475967 isoform X3
TrEMBL	A0A2K1YMI7	0.0	A0A2K1YMI7_POPTR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3666	29	38
Representative plant	OGRP8075	9	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	4e-45	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Potri.010G019600.1