PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.010G001300.1 | ||||||||
Common Name | POPTR_0010s00360g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GATA | ||||||||
Protein Properties | Length: 154aa MW: 16419.7 Da PI: 10.4775 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.3 | 1.1e-18 | 34 | 67 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk+ Potri.010G001300.1 34 CADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKK 67 ********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 1.05E-12 | 28 | 68 | No hit | No description |
PROSITE profile | PS50114 | 12.268 | 28 | 64 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 5.6E-13 | 28 | 78 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 6.7E-16 | 32 | 68 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.31E-12 | 33 | 68 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 34 | 59 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.2E-16 | 34 | 68 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MLSSVSLIVF QQGSESEEMS SKSLETESPQ KKTCADCGTS KTPLWRGGPA GPKSLCNACG 60 IRSRKKKRDI LGLNKGGAAA NDKRAKKGST NNGSSNYNNN NKQLGDGLKQ RLLALGREVL 120 VQGSTVERRR RKLGEEEQAA VLLMALSYGS VYA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 126 | 132 | ERRRRKL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.12428 | 0.0 | bud| catkin |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00335 | DAP | Transfer from AT3G06740 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.010G001300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006378027.1 | 3e-98 | GATA transcription factor 16 isoform X1 | ||||
Swissprot | Q8LG10 | 1e-44 | GAT15_ARATH; GATA transcription factor 15 | ||||
TrEMBL | U5FXH1 | 1e-106 | U5FXH1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s00360.1 | 1e-106 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1569 | 32 | 98 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 2e-43 | GATA transcription factor 15 |
Link Out ? help Back to Top | |
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Phytozome | Potri.010G001300.1 |
Entrez Gene | 7496479 |
Publications ? help Back to Top | |||
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