PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G001000.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARR-B
Protein Properties Length: 681aa    MW: 74111.3 Da    PI: 5.96
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G001000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.51.5e-28208261155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  Potri.010G001000.1 208 KPRVVWSVELHQQFVAAVHQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 261
                         79*******************.********************************8 PP
2Response_reg73.21e-24291371109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl+vdD+p+ + +l+++l+   y ev+ +  +e al ll+e++  +D+++ D+ mp+mdG++ll+ i  e  +lp+i+++a + ++ + + 
  Potri.010G001000.1  29 VLVVDDDPTCLVILEKMLRTCLY-EVTKCNRAEIALSLLRENRngYDIVISDVHMPDMDGFKLLELIGLEM-DLPVIMMSADDGKNVVMKG 117
                         89*********************.***************99999***********************6644.8****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         +  Ga d+l Kp+ +e+l +
  Potri.010G001000.1 118 VTHGACDYLIKPIRIEALKN 137
                         ****************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.0E-1819667IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.5E-4026174No hitNo description
SuperFamilySSF521723.56E-3426151IPR011006CheY-like superfamily
SMARTSM004481.1E-2827139IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.84928143IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.2E-2229137IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.01E-2630142No hitNo description
SuperFamilySSF466896.27E-20205265IPR009057Homeodomain-like
PROSITE profilePS5129411.37205264IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-30207266IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-24208261IPR006447Myb domain, plants
PfamPF002493.4E-8210260IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MLNLGYCKGS MSTASSGGVS DQFPAGLRVL VVDDDPTCLV ILEKMLRTCL YEVTKCNRAE  60
IALSLLRENR NGYDIVISDV HMPDMDGFKL LELIGLEMDL PVIMMSADDG KNVVMKGVTH  120
GACDYLIKPI RIEALKNIWQ HVVRKRKNEW KDLEQSGSVE EGGDRQQKQS EDADYSSSAN  180
EGSWKNSKRR KDEEEEADER DDTSTLKKPR VVWSVELHQQ FVAAVHQLGI DKAVPKKILE  240
LMNVPGLTRE NVASHLQKYR LYLRRLSGVS QHQSGMGNSF INPQEATYGP LSSLNGLDLQ  300
TLAAAGQIPA QSLATLQAAG LGRSTAKPRM PMPIVDQRNL FSFENPKLRF GEGQQQHLNN  360
GKQINLLHGI PTTMEPKQLA DLHHSAQSLG SMNMQLNAHG DQSGQSGSLL MQMSQQQSRG  420
QILNETTSSQ VPRLPSSIGQ PIVTNAIASG VLARNGLAEN GRGTGFNPVS QSSPTLNFPL  480
NTTAELTATS FALGSAPGVP SLTSKGTFPE DISSEMKGPG GFIMPSYDIF SELQHHRSHD  540
WELQNVGMAF NGSQQSNSLQ SNVDVASSVL AHQGFSSSQS NGQGRNISAV SKPIFSAGDA  600
TSHVNAQSLG QPLNTFFAEN LVRVKTERVP DANLQTTLFN EQFGQEDLMS ALLKQQQQAG  660
IGPAEIEFDF DGYSLDNIPV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-22207267464ARR10-B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in pollen. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:9891419}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G001000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN9081390.0FN908139.1 Populus x canadensis mRNA for putative B-type response regulator 13 (rr13 gene), cultivar Dorskamp.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024466703.10.0two-component response regulator ARR2 isoform X2
SwissprotQ9ZWJ90.0ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A2K1YLL30.0A0A2K1YLL3_POPTR; Two-component response regulator
STRINGPOPTR_0010s00320.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39583458
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.10.0response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]