PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.009G166900.1

Common Name

POPTR_0009s16830g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Nin-like

Protein Properties

Length: 904aa MW: 100711 Da PI: 7.731

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.009G166900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.2	1.6e-28	587	637	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF++++kdAAk++gvc+T+LKriCR++GI RWP+Rkik++ Potri.009G166900.1 587 EKTISLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRKHGITRWPSRKIKKV 637 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.382	576	657	IPR003035	RWP-RK domain
Pfam	PF02042	1.8E-24	589	637	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.89E-23	786	880	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.0E-23	793	873	No hit	No description
SMART	SM00666	1.8E-24	794	877	IPR000270	PB1 domain
PROSITE profile	PS51745	22.936	794	877	IPR000270	PB1 domain
Pfam	PF00564	8.3E-17	795	876	IPR000270	PB1 domain
CDD	cd06407	2.18E-43	795	876	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 904 aa Download sequence Send to blast
MDDGNGAFAP DSSFGNFSDA AMDLDFVDEL LYDGCCFETV DEFGFLEAGT SASNDLNDPK 60 QYLPFFESNS CNLNVNPCQE NYQVATEKNF QSGGFLVEKN ELGRRLWIAP TNNARSSTGV 120 RERLMHAIGQ LKQCTKDRDL LIQIWVPIKK EGKHVLTTFG QPYLLNPKSQ SLASYRNVSK 180 KFQFPAEEDS KELVGLPGRV FLRKLPEWTP DVSYFSWVEY PRKNHAKQFN IRGSFAVPVF 240 EQGSRTCLGV IEVVTTTQDV SYRSELESVC KALEAVDLRS PKDFRPSSLK ACKEFCQAAV 300 PEISKILESV CKTHRLPLAL TWAPCFRQGK GGCRHFDENY SNCICTVNSA CFVAETDNFG 360 FYVACSEQYL SFGQGIVGRA FTTRKQCFST DVAAFSKTDY PLSHHAKMFE LHAAIAIPVQ 420 STYAGPVDFV LEFFFPKDCC NTEEQKRMWD ILPITIKQAC WSLHVVMDKE LEETVNKKMK 480 FASLFKESSE AESSWIARVA EAQQKGKGVC VSWDHRKEEN KEEFKVTSHW GKTQDELYHK 540 QAFPEFGKFQ QNSVPKGSIE STTDAASAEH HSVGSRKSGD KRRTKTEKTI SLQVLRQYFA 600 GSLKDAAKSI GVCPTTLKRI CRKHGITRWP SRKIKKVGHS LKKLQLVIDS VQGAEGAIQI 660 GSFYTTFPEL TSPNFSANGG FPSSKANDDS NKSNHRPENG IFSAAASASK SPSSSSSQSS 720 GSSICFSGYP LLVEDPGGVL KRTHSDAALH ALNRDKSEPL IRSQSFKTFG DLPNPETLPP 780 LPKSSSQIIR DRSGFRVKAT FGADKIRFTL QPNWGFRDLQ QEIARRFNID DICRIDLKYL 840 DDDQEWVLLT CDADLEECKD VYKLSESHTI KMSLNQPSQP HLGSSLGSVG PNLVSLLGGG 900 GPF*

Sequence ? help Back to Top

Protein Sequence Length: 904 aa Download sequence Send to blast

MDDGNGAFAP DSSFGNFSDA AMDLDFVDEL LYDGCCFETV DEFGFLEAGT SASNDLNDPK  60
QYLPFFESNS CNLNVNPCQE NYQVATEKNF QSGGFLVEKN ELGRRLWIAP TNNARSSTGV  120
RERLMHAIGQ LKQCTKDRDL LIQIWVPIKK EGKHVLTTFG QPYLLNPKSQ SLASYRNVSK  180
KFQFPAEEDS KELVGLPGRV FLRKLPEWTP DVSYFSWVEY PRKNHAKQFN IRGSFAVPVF  240
EQGSRTCLGV IEVVTTTQDV SYRSELESVC KALEAVDLRS PKDFRPSSLK ACKEFCQAAV  300
PEISKILESV CKTHRLPLAL TWAPCFRQGK GGCRHFDENY SNCICTVNSA CFVAETDNFG  360
FYVACSEQYL SFGQGIVGRA FTTRKQCFST DVAAFSKTDY PLSHHAKMFE LHAAIAIPVQ  420
STYAGPVDFV LEFFFPKDCC NTEEQKRMWD ILPITIKQAC WSLHVVMDKE LEETVNKKMK  480
FASLFKESSE AESSWIARVA EAQQKGKGVC VSWDHRKEEN KEEFKVTSHW GKTQDELYHK  540
QAFPEFGKFQ QNSVPKGSIE STTDAASAEH HSVGSRKSGD KRRTKTEKTI SLQVLRQYFA  600
GSLKDAAKSI GVCPTTLKRI CRKHGITRWP SRKIKKVGHS LKKLQLVIDS VQGAEGAIQI  660
GSFYTTFPEL TSPNFSANGG FPSSKANDDS NKSNHRPENG IFSAAASASK SPSSSSSQSS  720
GSSICFSGYP LLVEDPGGVL KRTHSDAALH ALNRDKSEPL IRSQSFKTFG DLPNPETLPP  780
LPKSSSQIIR DRSGFRVKAT FGADKIRFTL QPNWGFRDLQ QEIARRFNID DICRIDLKYL  840
DDDQEWVLLT CDADLEECKD VYKLSESHTI KMSLNQPSQP HLGSSLGSVG PNLVSLLGGG  900
GPF*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.009G166900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024463757.1	0.0	protein NLP1
Refseq	XP_024463758.1	0.0	protein NLP1
Refseq	XP_024463759.1	0.0	protein NLP1
Refseq	XP_024463760.1	0.0	protein NLP1
Swissprot	Q8H111	0.0	NLP1_ARATH; Protein NLP1
TrEMBL	U5GKC2	0.0	U5GKC2_POPTR; Uncharacterized protein
STRING	POPTR_0009s16830.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1237	33	99
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Potri.009G166900.1
Entrez Gene	7481691

Publications ? help Back to Top
Suzuki W,Konishi M,Yanagisawa S The evolutionary events necessary for the emergence of symbiotic nitrogen fixation in legumes may involve a loss of nitrate responsiveness of the NIN transcription factor. Plant Signal Behav, 2014. [PMID:24270631]