PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.009G166800.1 | ||||||||
Common Name | POPTR_0009s16820g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Nin-like | ||||||||
Protein Properties | Length: 794aa MW: 88475.3 Da PI: 7.7404 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 85.6 | 4.3e-27 | 473 | 523 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++isle+l++yF++++kdA+++Lgvc T+LKriCRq+GIkRWP+Rki+++ Potri.009G166800.1 473 IQTISLEVLRRYFAGSLKDASQSLGVCSTTLKRICRQHGIKRWPSRKINKV 523 579**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.587 | 459 | 543 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 4.4E-24 | 475 | 523 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.08E-16 | 692 | 780 | No hit | No description |
PROSITE profile | PS51745 | 14.96 | 697 | 771 | IPR000270 | PB1 domain |
SMART | SM00666 | 2.8E-15 | 697 | 780 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 3.9E-16 | 698 | 776 | No hit | No description |
Pfam | PF00564 | 1.1E-11 | 700 | 779 | IPR000270 | PB1 domain |
CDD | cd06407 | 3.65E-30 | 700 | 779 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 794 aa Download sequence Send to blast |
MLTETSTPFA HPASCRVEAA GLGFEWQMVQ RVNPGTSFSV KERVMQAVGY LKHCIQDRDI 60 LIQIWLPMEK EGKRDAKRSV GFPGRVFLEK LPEWTPDVRL FRSEEYPHRD HAVQHNIRGS 120 LALPLFTQGS ETCLGIVEIA TTIQKISYRP ELQDICKVLQ AVDLRSSEDF CSPGVETCNR 180 LNRAAVPEIS DIVKSVCKTY RLPLALTWAL CSRQGKSGRQ QFPERFSSCI STVDSACFLA 240 DRGFSGFHMA SFEQYLFLGQ GIVGRAFTTQ KQCFTNDITS FSKKDYPLAH HAKIFGLHAA 300 IAIPLRSIST GLVEFVLEFF LPKDCQDTEE QKEMWDLLPI SIKQVCWSLQ VVMDKELDQG 360 ENQSFVSSPS KEPPRDESSW IAWMVEAQKK GKSCCITWDY PKEPKEEFKM ITPWDDSEEE 420 LDNKQVISEL GQLQQNPRPN SCIEGDGVSS AFGGCRSLGS RKTGKKRRTK TAIQTISLEV 480 LRRYFAGSLK DASQSLGVCS TTLKRICRQH GIKRWPSRKI NKVGHSLRKL QQVIDTVQGA 540 KGAVQIESFY SAFPELSSPK ISSHAPYSSL RSDNSKHLDS PPDDSSPSGT ASKSHSSPCS 600 GKSCSSNCCS ARAQQHDATT ITVSSNGNGA LLAETSNGIL KRTCSSELAE FHSMNNHGDP 660 DFLVRSQIHK TRTVSGHIHQ SELGSPRFAQ SLREGGVFGV KAIFGVEKVR LGLQPNWGLR 720 DLQQEIGKRF EIDDFTDIGL NYMDDNGEWV RLTCDGDLEE CKEIHIFSQR NTMKISCHDP 780 NLVSMTSNTG ATL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 464 | 469 | KKRRTK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.009G166800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024464572.1 | 0.0 | protein NLP2 | ||||
TrEMBL | B9HPY4 | 0.0 | B9HPY4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s16820.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1237 | 33 | 99 | Representative plant | OGRP299 | 16 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35270.1 | 0.0 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.009G166800.1 |
Entrez Gene | 7474894 |