PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G166300.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Nin-like
Protein Properties Length: 219aa    MW: 24842.1 Da    PI: 9.4681
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G166300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK35.52e-11701151751
              RWP-RK  17 pikdAAkeLg...........vclTvLKriCRqyGIkRWPhRkiks 51 
                         ++kdAA ++g             +T LKri Rq+GI  WP+Rkik+
  Potri.009G166300.1  70 SLKDAAESIGgaytvcsncsfPYPTSLKRIRRQHGITQWPSRKIKK 115
                         89************5554444448*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF020422.5E-1070115IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MDKELKEEPN WRIIAASDGR LNTGENQSFA SSSPQDESSW ISHMAGAQKK GGKVAVTWNC  60
AQEPKEEFKS LKDAAESIGG AYTVCSNCSF PYPTSLKRIR RQHGITQWPS RKIKKADHSL  120
RKLQKIIDSA QGIKGSIQIE SFYSAFPELK SELCALNQKV ISQIHKTVRE LQSQLEPAQF  180
GQSLREEGVF RSLKPNWDFR DLQQEIGKRF KIDDFQWH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G166300.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029130967.15e-31protein NLP2 isoform X1
RefseqXP_029130968.15e-31protein NLP2 isoform X2
TrEMBLA0A2K1Z9151e-160A0A2K1Z915_POPTR; Uncharacterized protein
STRINGPOPTR_0009s16780.11e-119(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2273623
Representative plantOGRP2991697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.14e-28Nin-like family protein