PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G149400.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 276aa    MW: 29645.6 Da    PI: 4.4673
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G149400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00018249272123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         ++C+ C+k F +   Lk+H +  H
  Potri.009G149400.2 249 FSCKSCDKAFGTDGALKSHSQAkH 272
                         89*****************76655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF030661.9E-76163No hitNo description
PROSITE profilePS5015710.803249275IPR007087Zinc finger, C2H2
PROSITE patternPS000280251272IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MSSMEFWGVE VKAGEPLKVE PKDFCMIHLS QAALGESKKG NESVPLFVKF DEKKLVLGTL  60
SPENIPQLSF DLVFEKEFEL SHNWKKGSVF FCGYQVIPDD DASDFSGDEE DFEFAKADIM  120
KAATAKDKAA KPEKPKATLV EPSIDDDEDD SDEDDSDEDG DSEEGMSLDE DSDDESDSED  180
EETPKKAETS KKRATDSATK TPVSSKKAKT ATPLKTDAKK AGQVTPHPAK GKAAANGNSS  240
KSPKSGGNFS CKSCDKAFGT DGALKSHSQA KHGAK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.113170.0bud| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during fertilization, while it is repressed during seed development. {ECO:0000269|PubMed:15082924}.
UniprotTISSUE SPECIFICITY: Predominantly expressed in ovaries. Accumulates predominantly in the micropylar region of the ovule's integument. {ECO:0000269|PubMed:15082924}.
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G149400.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1447300.0EF144730.1 Populus trichocarpa clone WS01117_I04 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313645.20.0histone deacetylase HDT1
SwissprotQ6V9I61e-61HDT1_SOLCH; Histone deacetylase HDT1
TrEMBLA9P9960.0A9P996_POPTR; Uncharacterized protein
STRINGPOPTR_0009s15160.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.21e-36histone deacetylase 3
Publications ? help Back to Top
  1. Lagacé M,Chantha SC,Major G,Matton DP
    Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules.
    Plant Mol. Biol., 2003. 53(6): p. 759-69
    [PMID:15082924]
  2. Ralph SG, et al.
    Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.
    BMC Genomics, 2008. 9: p. 57
    [PMID:18230180]