PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.009G134000.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB_related | ||||||||
Protein Properties | Length: 199aa MW: 21716.5 Da PI: 7.3728 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.3 | 4.2e-09 | 14 | 38 | 22 | 47 |
T-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqky 47 W++Ia +++ gRt++++k++w+++ Potri.009G134000.2 14 SKWSLIAGRLP-GRTDNEIKNYWNTH 38 46*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.151 | 1 | 43 | IPR017930 | Myb domain |
CDD | cd00167 | 3.36E-6 | 4 | 39 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-13 | 8 | 40 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.87E-8 | 11 | 48 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.3E-7 | 13 | 38 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MSSLSNSIAS LETSKWSLIA GRLPGRTDNE IKNYWNTHIR RKLLNRGIDP ATHRPLNEPA 60 VQEATTTISF TTTTTSVLEE ESLGSIIKEE NKEKIISATA FVCKEEKTQV QERCPDLNLE 120 LGISLPSQNQ PDHHQPFKTG GSRSLCFACS LGLQNSKDCS CNVIVSTVGS SGSTSTKTGY 180 DFLGMKSGVL DYRSLEMK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.17144 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.009G134000.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ807470 | 0.0 | FJ807470.1 Populus trichocarpa MYB transcription factor (MYB156) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002312966.1 | 1e-134 | myb-related protein 308 | ||||
Swissprot | P81393 | 3e-52 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | B9HR69 | 1e-133 | B9HR69_POPTR; MYB family protein | ||||
STRING | POPTR_0009s13640.1 | 1e-134 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34990.1 | 5e-40 | myb domain protein 32 |
Link Out ? help Back to Top | |
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Phytozome | Potri.009G134000.2 |
Publications ? help Back to Top | |||
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