PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.009G125300.3 | ||||||||
Common Name | POPTR_0009s12820g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 302aa MW: 33545.2 Da PI: 9.917 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 59.1 | 2e-18 | 1 | 114 | 1 | 92 |
GAGA_bind 1 mdddgsre..rnkg.yye.....................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkal 67 mdd g+++ r+k yy+ ++++l+ +++++m+++ erd++irernlal+ekk+a+a+rd+a +qr+kal Potri.009G125300.3 1 MDDGGQHQngRFKMdYYKaahphphppawnmmsqhqvkeQTNALA--MNKKIMTILIERDDAIRERNLALAEKKEALAARDEAIQQREKAL 89 88988876799998899999******9999999887743335555..99****************************************** PP GAGA_bind 68 aernkalverdnkllalllvensla 92 er+kal+erdn+l+a++++en+++ Potri.009G125300.3 90 VERDKALMERDNALAAIQYRENAMS 114 **********************987 PP | |||||||
2 | GAGA_bind | 273.9 | 7.8e-84 | 122 | 301 | 123 | 301 |
GAGA_bind 123 avelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPv 212 a ++ e+++++alpi++ + e+ +++++k+++++k k ak+++k s++ ++ +k+ +d ++ k e++s+d++ln +++De+t+P+Pv Potri.009G125300.3 122 ALDTGEMHITDALPISSVTAETGKARQTKRSKENKAVGLKAAKSPRKGSRVGEDLNKQGASDgKKIKVEWDSQDVGLNLINFDETTMPAPV 212 67899************999999999999888888887778888887666666655555555699************************** PP GAGA_bind 213 CsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 CsCtG++rqCYkWG+GGWqSaCCttt+S yPLP+++++r+aRi+grKmS+++f++lL++LaaeG+dl+ p+DLkd+WA+HGtn+++ti+ Potri.009G125300.3 213 CSCTGVPRQCYKWGSGGWQSACCTTTMSSYPLPQMPNKRHARIGGRKMSGNVFTRLLSRLAAEGHDLAIPLDLKDYWARHGTNRYITIK 301 ****************************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 1.6E-165 | 1 | 301 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 6.5E-102 | 1 | 301 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0050793 | Biological Process | regulation of developmental process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MDDGGQHQNG RFKMDYYKAA HPHPHPPAWN MMSQHQVKEQ TNALAMNKKI MTILIERDDA 60 IRERNLALAE KKEALAARDE AIQQREKALV ERDKALMERD NALAAIQYRE NAMSYPLSGG 120 KALDTGEMHI TDALPISSVT AETGKARQTK RSKENKAVGL KAAKSPRKGS RVGEDLNKQG 180 ASDGKKIKVE WDSQDVGLNL INFDETTMPA PVCSCTGVPR QCYKWGSGGW QSACCTTTMS 240 SYPLPQMPNK RHARIGGRKM SGNVFTRLLS RLAAEGHDLA IPLDLKDYWA RHGTNRYITI 300 K* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.16347 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.009G125300.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF148646 | 0.0 | EF148646.1 Populus trichocarpa x Populus deltoides clone WS0135_K07 unknown mRNA. | |||
GenBank | FJ982258 | 0.0 | FJ982258.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC4) gene, complete cds. | |||
GenBank | FJ982259 | 0.0 | FJ982259.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006379265.1 | 0.0 | protein BASIC PENTACYSTEINE4 | ||||
Swissprot | Q8S8C6 | 1e-142 | BPC4_ARATH; Protein BASIC PENTACYSTEINE4 | ||||
TrEMBL | A0A1X9IVB1 | 0.0 | A0A1X9IVB1_POPTO; Uncharacterized protein | ||||
STRING | POPTR_0009s12820.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21240.2 | 1e-138 | basic pentacysteine 4 |
Link Out ? help Back to Top | |
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Phytozome | Potri.009G125300.3 |
Entrez Gene | 7463987 |