PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G122000.1
Common NamePOPTR_0009s12490g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family DBB
Protein Properties Length: 218aa    MW: 24021.9 Da    PI: 6.8701
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G122000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box201.5e-06544437
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                         +C+ +++ e++ fC  ++  lC+ C    H+       H
  Potri.009G122000.1  5 IRCDVCDKVEATVFCCADEAALCDGCDHRVHHAntlaskH 44
                        58******99******************997443666666 PP
2zf-B_box29.51.6e-095694238
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                        e + C+ ++e ++ lfC++++  lC++C l +Hk   Ht
  Potri.009G122000.1 56 ESPLCDICQERRAVLFCQEDRAILCRECDLPIHKVneHT 94
                        6789*****************************656665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.8E-7249IPR000315B-box-type zinc finger
PROSITE profilePS5011910.04249IPR000315B-box-type zinc finger
CDDcd000219.22E-5549No hitNo description
SMARTSM003361.3E-1555102IPR000315B-box-type zinc finger
PROSITE profilePS5011910.56655102IPR000315B-box-type zinc finger
PfamPF006434.0E-85694IPR000315B-box-type zinc finger
CDDcd000215.66E-1058102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MTMKIRCDVC DKVEATVFCC ADEAALCDGC DHRVHHANTL ASKHSRFSLV HPSFKESPLC  60
DICQERRAVL FCQEDRAILC RECDLPIHKV NEHTQKHNRF LLTGVKLCGP SLYATSSSAS  120
NCDANINTTR NRNHQHYLKK PISASNEIFS SPSVATASPP TAYSYDDNHV SGGGSVSTSS  180
ISEYLETVVP GWRVDDFLDP SFTSNNSFSK GWNAPYI*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G122000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313769.21e-162B-box zinc finger protein 20
SwissprotQ0IGM78e-66BBX20_ARATH; B-box zinc finger protein 20
TrEMBLA0A2K1Z6R91e-161A0A2K1Z6R9_POPTR; Uncharacterized protein
STRINGPOPTR_0009s12490.11e-153(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14483494
Representative plantOGRP29841130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.11e-66DBB family protein
Publications ? help Back to Top
  1. Wei CQ, et al.
    The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis.
    J Genet Genomics, 2016. 43(9): p. 555-563
    [PMID:27523280]
  2. Thussagunpanit J, et al.
    Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin.
    Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301
    [PMID:27858514]