PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G120800.2
Common NamePOPTR_0009s12360g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 585aa    MW: 64592.7 Da    PI: 6.5461
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G120800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.4e-093253621954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  Potri.009G120800.2 325 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 362
                         664459******************************88 PP
2BELL127.83.9e-41187258172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         erqelq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpY++lAl++iS+hFrcL+dai++qi
  Potri.009G120800.2 187 ERQELQNKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYIALALQTISQHFRCLRDAITGQI 258
                         79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.6E-65128256IPR006563POX domain
PfamPF075261.7E-49134255IPR006563POX domain
PROSITE profilePS5007112.163303366IPR001356Homeobox domain
CDDcd000868.08E-13306367No hitNo description
SMARTSM003891.0E-9306370IPR001356Homeobox domain
SuperFamilySSF466892.14E-17307373IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.6E-29309372IPR009057Homeodomain-like
PfamPF059203.8E-18323362IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MATYYTSSNN QRDAAAMVYL PGSYPEAPVL HGNMMMYMNS GSYSDNLAGN SHHQNNCIEF  60
QSVENSANPQ QQEILSNLGG SRIGEHDFGA WRDGRNEMLV MQSVSGASSI LHGNHDVNKG  120
DLSPYGMNSV GRTIPNSKYL KAAQQLLDEV VNVQKALKQP DKEKNQTTSE HGLNQSTNSP  180
SELSHAERQE LQNKLTKLLS MLDEVDRRYK QYYHQMQIVV SSFDVIAGCG AAKPYIALAL  240
QTISQHFRCL RDAITGQIRA TRNNLGEQET SENSKGVGIS RLRYVDQQLR QHRALQQLGM  300
MKQHAWRPQR GLPESSVSIL RAWLFEHFLH PYPKDSDKIM LARQTGLTRS QVSNWFINAR  360
VRLWKPMVEE MYKEELGDAE MDSNSSSENA AKATKGDMGT SEEKGEEFQQ SASSTATGRC  420
SGGQLMDSKS DHVSEVEMAG TTARSNFHNG TRGETFTEYG LLKLREDQRP SMEDCSLFSD  480
AMAHSEGGGD RFMAAAAAAY QMSEVRRFGN GSGVSLTLGL QHCEGGSLPM SGTTHHGFVS  540
VRGDDDIYNA ASSVGAGPTD FECLNPGNRQ HRFSSSHVFH DFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A6e-17312369158Homeobox protein Meis1
4xrs_B6e-17312369158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G120800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0288611e-134CT028861.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464462.10.0BEL1-like homeodomain protein 7
TrEMBLA0A2K1Z6R30.0A0A2K1Z6R3_POPTR; Uncharacterized protein
STRINGPOPTR_0009s12360.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-146BEL1-like homeodomain 7