PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G117200.1
Common NamePOPTR_0009s11990g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 114aa    MW: 12864.4 Da    PI: 6.5227
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G117200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.48e-091258144
                        TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                        r +WT+ E +l+ +a +++ ++   +W  Ia+ +g  ++++++k ++
  Potri.009G117200.1 12 RSAWTPRENKLFEKALALFDKDtpdRWQNIAKAVGGVKSAEEVKKHY 58
                        789********************************668********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-4862IPR009057Homeodomain-like
PROSITE profilePS5129310.0171066IPR017884SANT domain
SMARTSM007177.4E-91164IPR001005SANT/Myb domain
PfamPF002493.9E-71258IPR001005SANT/Myb domain
SuperFamilySSF466891.5E-111370IPR009057Homeodomain-like
CDDcd001671.17E-61458No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MSSSYQASRN SRSAWTPREN KLFEKALALF DKDTPDRWQN IAKAVGGVKS AEEVKKHYEI  60
LIEDLQHIES GRIPIPKYKS SGSCNNTNEE ESEVQDSDRL PIYVCGKWML LSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-31790385RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G117200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313044.25e-80protein RADIALIS-like 4 isoform X1
SwissprotQ1A1731e-31RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLB9HRM51e-78B9HRM5_POPTR; Uncharacterized protein
STRINGPOPTR_0009s11990.12e-79(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.14e-32RAD-like 1