PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G106600.4
Common NamePOPTR_0009s10980g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family G2-like
Protein Properties Length: 287aa    MW: 31857.9 Da    PI: 8.9101
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G106600.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like36.11.4e-11261285125
             G2-like   1 kprlrWtpeLHerFveaveqLGGse 25 
                         k+r++W+peLH+rFv+a++qLGGs+
  Potri.009G106600.4 261 KQRRCWSPELHRRFVNALQQLGGSQ 285
                         79*********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-8259284IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-7261283IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGSLSSELSL DFARPSTAKA LPFLPKTIAD FLKEVSVIGD SAVKVLKVDG FIKDLEEEKR  60
KIDAFKRELP LCMLLLNDAI QVLREEPMQR GASKNQQPVL EEFIPLKKNI DDHHENDGLI  120
EEKDSKDKKN WMSSVQLWNA DDHHPSTDYL FDPKQNLKLE SKTNKKGNQY GNEDAFQAGI  180
GRTAARTFMP FKACSGLSSK EEKLPVPSLS LSTPGIKSLK EESNSTGSRS SCSRSVSTIS  240
GPNSDSNLRN GPQSQQQTAR KQRRCWSPEL HRRFVNALQQ LGGSQG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.94520.0bud| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G106600.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1472190.0EF147219.1 Populus trichocarpa clone WS01229_I10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313089.10.0myb family transcription factor EFM isoform X1
TrEMBLB9HRW40.0B9HRW4_POPTR; Uncharacterized protein
STRINGPOPTR_0009s10980.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.13e-32G2-like family protein