PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.009G101900.1 | ||||||||
Common Name | POPTR_0009s10470g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 267aa MW: 29364.1 Da PI: 8.476 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.5 | 2.2e-20 | 131 | 180 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ + +r++lg+f taeeAa+a+++a+ ++g Potri.009G101900.1 131 NYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFNTAEEAARAYDKAAIDFRG 180 59*******.**********94....36**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.3E-33 | 131 | 188 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.211 | 131 | 188 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.6E-38 | 131 | 194 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-23 | 131 | 189 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.92E-35 | 131 | 188 | No hit | No description |
Pfam | PF00847 | 1.9E-14 | 131 | 180 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-12 | 132 | 143 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-12 | 154 | 170 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MQRSPKRPKI NEAPSATLFS PPAAPPLRLT QEQEVAVMVA ALKNVVSGTA SMDFSREMNS 60 INMPIITSHP QFGSASNNGN GFCNSILPPS SDLDTCGVCK IKGCLGCNFF PPNQEDKKDD 120 KKGKRKRVKK NYRGVRQRPW GKWAAEIRDP RKAARVWLGT FNTAEEAARA YDKAAIDFRG 180 PRAKLNFPFP DSGIASFEES KEKQEKQQEI SEKRSEFETE TGKDNEFLDN IVDEELQEWM 240 AMIMDFGNGG SSNSSGTASA AATIGF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-23 | 130 | 189 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-23 | 130 | 189 | 4 | 64 | ATERF1 |
3gcc_A | 2e-23 | 130 | 189 | 4 | 64 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.009G101900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002313851.2 | 0.0 | ethylene-responsive transcription factor ERF109 | ||||
Swissprot | Q9SZ06 | 9e-36 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A2I4KKP2 | 0.0 | A0A2I4KKP2_POPTR; ERF family protein | ||||
STRING | POPTR_0009s10470.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2962 | 30 | 72 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 1e-33 | redox responsive transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.009G101900.1 |
Entrez Gene | 7490035 |
Publications ? help Back to Top | |||
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