PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.009G088400.1 | ||||||||
Common Name | POPTR_0009s09150g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GeBP | ||||||||
Protein Properties | Length: 382aa MW: 42786.7 Da PI: 5.6642 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 119.7 | 1.5e-37 | 161 | 256 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 lfqrlw+eeDei+lLqG+idf a++g +ps+d++afy+f+k+s++f+vs +ql +Ki rL+kKf+++vk k+g+++ fsk+hdqk f+ls Potri.009G088400.1 161 LFQRLWTEEDEIALLQGIIDFIAEKGYDPSKDMNAFYDFIKRSLHFDVSMTQLKDKISRLRKKFENHVKG-KKGESKIFSKPHDQKGFDLS 250 79******************************************************************99.99****************** PP DUF573 93 kkiWgs 98 k iWgs Potri.009G088400.1 251 KYIWGS 256 ****95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 4.9E-33 | 162 | 255 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MAPKRAPPVE DPPSASSSEE EEETSSGEEE ASDDEQSHPS PPQPQTKTIR TQNSAPKKPE 60 PTTQQSESEL ESDSGSESES ESESEPDQSV KPITSKPMEE TPPKEAAAVK KSRSKPAVAA 120 TPEKSTAVKR GNGADRDSKD LKRAKSKESE PEKSEDSKKQ LFQRLWTEED EIALLQGIID 180 FIAEKGYDPS KDMNAFYDFI KRSLHFDVSM TQLKDKISRL RKKFENHVKG KKGESKIFSK 240 PHDQKGFDLS KYIWGSEGTI KANGKKNNNS NDNRKGNAKK LEALKAELGM DVGEEERMEV 300 EMERDSSVKK VLKFDGSVSG GKMDDYVVRN GLDFAHGMKK AEMEEKWRKL HMAELELFLK 360 RNELIREQAK LMLSAFKADK D* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.11158 | 0.0 | bud| leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.009G088400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF145118 | 0.0 | EF145118.1 Populus trichocarpa clone WS01120_J07 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002313912.1 | 0.0 | GLABROUS1 enhancer-binding protein-like | ||||
TrEMBL | B9HMZ5 | 0.0 | B9HMZ5_POPTR; GeBP family protein | ||||
STRING | POPTR_0009s09150.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 | Representative plant | OGRP4222 | 5 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25210.1 | 7e-37 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Potri.009G088400.1 |
Entrez Gene | 7478738 |