PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.009G084100.1 | ||||||||
Common Name | POPTR_0009s08740g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 218aa MW: 24606.3 Da PI: 10.0364 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.2 | 5.9e-20 | 18 | 63 | 3 | 48 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 i k qvtfskRr+g++KKA+EL++LC++++a+++fs+ k + Potri.009G084100.1 18 IPKKNHLQVTFSKRRAGLFKKASELCTLCGVDIAILVFSPAHKAFS 63 6667778********************************9887655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.268 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.7E-31 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.29E-26 | 8 | 85 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-16 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-22 | 17 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-16 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-16 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MVNKKPSMGR QKIKIEKIPK KNHLQVTFSK RRAGLFKKAS ELCTLCGVDI AILVFSPAHK 60 AFSFGHPDVD SIMDRFLTRN APPQSSGTHQ LIEAHRNANV REHNMQLTQI LNQLEAEKRH 120 SETLNQMRKS SRSQCWWEAP VEELGLQELE QLRDALEELK KRLTKQTNKI LIESSNSLPF 180 LPVNGTGQIG NFETKPEICV ASTLPHVNNF GYGHGIF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-18 | 8 | 94 | 1 | 87 | MEF2C |
5f28_B | 2e-18 | 8 | 94 | 1 | 87 | MEF2C |
5f28_C | 2e-18 | 8 | 94 | 1 | 87 | MEF2C |
5f28_D | 2e-18 | 8 | 94 | 1 | 87 | MEF2C |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269|PubMed:18334668}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:18334668}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.009G084100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011005044.1 | 1e-160 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 2e-54 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2K1Z4W3 | 1e-161 | A0A2K1Z4W3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s08740.1 | 1e-161 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 9e-51 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Potri.009G084100.1 |
Entrez Gene | 7478759 |
Publications ? help Back to Top | |||
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