PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G075100.1
Common NamePOPTR_0009s07890g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family G2-like
Protein Properties Length: 328aa    MW: 36707 Da    PI: 8.3569
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G075100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like94.58.6e-3060114255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ.kYRl 55 
                         prlrWtp+LH +Fv+ave+LGG+e+AtPk +l+lm+ kgL+++hvkSHLQ +YR+
  Potri.009G075100.1  60 PRLRWTPDLHLCFVQAVERLGGHERATPKLVLQLMNFKGLSIAHVKSHLQqMYRS 114
                         8************************************************648997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-2756115IPR009057Homeodomain-like
PROSITE profilePS5129412.36156116IPR017930Myb domain
SuperFamilySSF466898.96E-1358112IPR009057Homeodomain-like
TIGRFAMsTIGR015575.9E-2160115IPR006447Myb domain, plants
PfamPF002498.1E-961110IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MPGSDQNCDG LKFDPSGKNN EEGDDESKTK NSGSSSNSIV EECEKASSSG VRPYARSKVP  60
RLRWTPDLHL CFVQAVERLG GHERATPKLV LQLMNFKGLS IAHVKSHLQQ MYRSKKIDDQ  120
GQVINGTGDL IGSSDKFSHE FWQHSLLPNI DHNHNSNFRY GNVPWSGHGN WITNPSVPDS  180
INVRRGAGFY SLMAEKISGE KLMQESQDTE YHKSMYNSES IRSQTSSTIK QPYFVAQLSK  240
RRGEANESVS LETKWSFNVE KCNKAKRKVD DLDLTLSLCT KLKGKEVKRS LSWDVEDEGS  300
DLYLSLSSTS TKECNSITLS MPSKYPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-1661116357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-1661116357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-1661116357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-1661116357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G075100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2103420.0AC210342.1 Populus trichocarpa clone POP091-B06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464346.10.0two-component response regulator ARR14
TrEMBLA0A2K1Z4C50.0A0A2K1Z4C5_POPTR; Uncharacterized protein
STRINGPOPTR_0009s07890.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1655549
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.15e-47G2-like family protein