PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.009G072100.1 | ||||||||
Common Name | POPTR_0009s07640g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 223aa MW: 25652.9 Da PI: 9.8247 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 54.7 | 3.4e-17 | 13 | 135 | 2 | 121 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpkkvka....eekewyfFskrdkkyatgkrknratk..sgyWka 85 ppG+rF Ptd el ++yL +kv+g +l+ ++k++++y ++ePw++ +++++ ++++++f ++ ++++a+++r++r + g+Wk Potri.009G072100.1 13 PPGYRFCPTDVELACFYLYRKVNGLPLPN--TVKDCNLYgDHEPWEIWEAFEGselsNKDDLFFLTQLKNRSAKDSRSKRRVGrnGGTWKG 101 89************************888..79****994579****75333322324457899999999999999999853334899**9 PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdW 121 k + + ++ ++++k L + + +++k +++ Potri.009G072100.1 102 DKKIGTFTF--DTITWTRKRLSYQNPNSKKNDRCNY 135 888777777..7789********9888888778776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-17 | 10 | 134 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 15.761 | 12 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.0E-12 | 13 | 129 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MQGEHDSSNI EPPPGYRFCP TDVELACFYL YRKVNGLPLP NTVKDCNLYG DHEPWEIWEA 60 FEGSELSNKD DLFFLTQLKN RSAKDSRSKR RVGRNGGTWK GDKKIGTFTF DTITWTRKRL 120 SYQNPNSKKN DRCNYVHCLV RKKVTKRTDG TNVSHNHNAI EKSQRCDRPF ALEEHHQAKR 180 LKLDLAQPHQ LICNYNQQTE AIPTGGMSAF ATSHRRKVKV TP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.009G072100.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002313991.2 | 1e-169 | NAC domain-containing protein 71 | ||||
TrEMBL | A0A2K1Z479 | 1e-168 | A0A2K1Z479_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s07640.1 | 1e-166 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF557 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17980.1 | 8e-11 | NAC domain containing protein 71 |
Link Out ? help Back to Top | |
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Phytozome | Potri.009G072100.1 |
Entrez Gene | 7475014 |