PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.009G070800.1 | ||||||||
Common Name | POPTR_0009s07510g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | SRS | ||||||||
Protein Properties | Length: 357aa MW: 36965.7 Da PI: 8.4982 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 210 | 6.1e-65 | 139 | 298 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstkls 92 s t++CqdCGnqakkdC+h+RCRtCCksrgfdC thvkstWvpaa+rrerq +++a a s+ +++ k++r +++q+++s+t++s Potri.009G070800.1 139 SATTTCQDCGNQAKKDCSHRRCRTCCKSRGFDCVTHVKSTWVPAARRRERQLMATAGGGGGAGSTgSTSGVKKPRL--ISSQTTTSHTSTS 227 57899*********************************************98888776666555536667777776..5888888888888 PP DUF702 93 saeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++++ + +tss lP +v ++a frcvrv++v+dge+e+aYq++v+igGhvfkG+LydqG+e+ Potri.009G070800.1 228 NTTPR-SYDTSSshqgfefikrLPGQVTAPATFRCVRVTAVEDGEDEFAYQAVVKIGGHVFKGFLYDQGVET 298 88755.555555589999***************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.5E-61 | 141 | 297 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 3.9E-27 | 143 | 185 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 2.7E-28 | 248 | 296 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MGMVGLRDVF VVAPAASFNH HHQHHEQINL STADPINASN ATALGVGVGV GVIPLLAAGP 60 CLAPQNMDDQ DLLNNGRNKI SGIHQFWQNQ GSQYIKKASN TTPSILDHHN NSSTANFLLQ 120 SGNSAGNGSG SLGGNSSSSA TTTCQDCGNQ AKKDCSHRRC RTCCKSRGFD CVTHVKSTWV 180 PAARRRERQL MATAGGGGGA GSTGSTSGVK KPRLISSQTT TSHTSTSNTT PRSYDTSSSH 240 QGFEFIKRLP GQVTAPATFR CVRVTAVEDG EDEFAYQAVV KIGGHVFKGF LYDQGVETRD 300 GFPNISELHL GGGSSSGGNG VGRNGASSSP ILDPSDVYGA STGGLLGGSG YGNPIN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.8720 | 0.0 | bud| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}. | |||||
Uniprot | TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.009G070800.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006379117.1 | 0.0 | protein LATERAL ROOT PRIMORDIUM 1 | ||||
Swissprot | Q94CK9 | 2e-90 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | U5G3K7 | 0.0 | U5G3K7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s07510.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6504 | 33 | 51 | Representative plant | OGRP1313 | 15 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 3e-73 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Potri.009G070800.1 |
Entrez Gene | 7475019 |
Publications ? help Back to Top | |||
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