PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G060600.5
Common NamePOPTR_0009s06540g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YA
Protein Properties Length: 308aa    MW: 33578.2 Da    PI: 8.9015
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G060600.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.61.6e-31170226158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         +ep+YVNaKQ+++I++RRq+Rak+e ekk   k rkpylheSRh+hAlrR+Rg+gGrF
  Potri.009G060600.5 170 EEPVYVNAKQFHGIMRRRQARAKAELEKKA-VKVRKPYLHESRHQHALRRARGCGGRF 226
                         69***************************9.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.2E-36168229IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.353169229IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.7E-27171226IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.1E-23172194IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860174194IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.1E-23203226IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MMPAKSEKED RRLDHSGPSP FQTNIYSQPW WRDVGNSPSL GDTASKLSSV EHLNGSLANA  60
AIQSQVNTGL QKGAMVNKDM QTDVTSQSDE SNEQEHHLKH IPSPTTVTMG GHLEPNSQME  120
LVGHSIVLTS HPYTDPQYGG MFASYGAQAM VPQLYGMPHA RMPLPLEMEE EPVYVNAKQF  180
HGIMRRRQAR AKAELEKKAV KVRKPYLHES RHQHALRRAR GCGGRFLNTK KLDNSATNPT  240
SEKGSGDLNS SGDLEEGKGS QASSNGHGNG HALSSRYHSS SHDGSFLGQQ KETTHGNRVS  300
NGAVSIH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A9e-20170234266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.81300.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G060600.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ9144400.0HQ914440.1 Populus euphratica CCAAT-binding transcription factor subunit B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464897.10.0nuclear transcription factor Y subunit A-7
RefseqXP_024464898.10.0nuclear transcription factor Y subunit A-7
TrEMBLU5G6330.0U5G633_POPTR; Uncharacterized protein
STRINGPOPTR_0009s06540.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.45e-31nuclear factor Y, subunit A1