PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G052900.5
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YA
Protein Properties Length: 348aa    MW: 38180.4 Da    PI: 6.4084
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G052900.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA93.82e-29167223158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         ++p++VNaKQy +I++RR++Rak+e +kkl +k+rkpylheSRh+hA+rR+R+sgGrF
  Potri.009G052900.5 167 QDPVFVNAKQYPGIIRRREQRAKAEVDKKL-IKARKPYLHESRHRHAMRRERSSGGRF 223
                         58****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.6E-32165226IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115233.047166226IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.3E-26169223IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.7E-21169191IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860171191IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.7E-21200223IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MQSKPEKTNV PEPDPSDIQE YTVHSEPWWR NIGYSSMPPA MTGGNASNSE GHNGSESNDD  60
QSLSSGRLNE EDADATKDSQ ATASSQLGNH GHLQNLQGLV SSMTTMHNGL SQSPQFELVS  120
HSIACASNPY QDAYYSGMMA YGHQPLGYPQ FVGMPHARML LPLEVAQDPV FVNAKQYPGI  180
IRRREQRAKA EVDKKLIKAR KPYLHESRHR HAMRRERSSG GRFAKKTGDD ASKNTSEGKL  240
NGSGPVHASQ SRSSSGSELL PSDSVETWNS SEGQKEARES QVHDTFEAHD YVNRGGHYQK  300
HSGLQSSAYG SYLGDNEDGD RSGENEDEDC PGQQLGNQAK RRFFGPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-15167223258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207216RHRHAMRRER
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G052900.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464100.10.0nuclear transcription factor Y subunit A-1 isoform X1
RefseqXP_024464101.10.0nuclear transcription factor Y subunit A-1 isoform X1
RefseqXP_024464102.10.0nuclear transcription factor Y subunit A-1 isoform X1
RefseqXP_024464103.10.0nuclear transcription factor Y subunit A-1 isoform X1
RefseqXP_024464104.10.0nuclear transcription factor Y subunit A-1 isoform X1
RefseqXP_024464105.10.0nuclear transcription factor Y subunit A-1 isoform X1
SwissprotQ9LXV59e-72NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLA0A2K1Z3540.0A0A2K1Z354_POPTR; Uncharacterized protein
STRINGPOPTR_0009s05760.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.49e-65nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Siriwardana CL, et al.
    NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T.
    PLoS Genet., 2016. 12(12): p. e1006496
    [PMID:27977687]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]