PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G052300.1
Common NamePOPTR_0009s05700g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 387aa    MW: 43753.7 Da    PI: 5.8216
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G052300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM147.95e-46842092128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         p+G+rF P+++elv +yLk+kv+g +l+  + i++v +y+++P++L +++k+ +e+ewyfF++rdkky++g+r+nra+  gyWkatg dk+
  Potri.009G052300.1  84 PAGYRFCPHNHELVLHYLKNKVSGLPLPR-NRIADVSLYQHNPEELAEQFKHyGEREWYFFTPRDKKYRNGTRPNRAAGGGYWKATGADKK 173
                         89*************************99.77**************9655543788*********************************** PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++ +++ vg +k+Lv+y+g+apkg kt+W+mhe+r+
  Potri.009G052300.1 174 IVH-DKAIVGYRKSLVYYNGKAPKGDKTNWMMHEFRM 209
                         ***.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-5381236IPR003441NAC domain
PROSITE profilePS5100552.09583236IPR003441NAC domain
PfamPF023651.5E-2384209IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MSCQGDIAFE CPTMEFTEES KPNVQVSATT SGVSNSLSEP FKPSPSSPSS VNSSQPSPRI  60
SGHDHVINPD NNDDDGDSYF NNFPAGYRFC PHNHELVLHY LKNKVSGLPL PRNRIADVSL  120
YQHNPEELAE QFKHYGEREW YFFTPRDKKY RNGTRPNRAA GGGYWKATGA DKKIVHDKAI  180
VGYRKSLVYY NGKAPKGDKT NWMMHEFRME AAAPPIRNNI NDMRLDEWVL CRIYKKIQKP  240
VKYREQFSSQ KHQLLIGPND LAAMDGDRNS GNDSWENPWQ QQATPPLAGF DDLFFFCNSY  300
SAAQVPFLPE TYEDPVPMLL SSDFSKGLPE EIWNPPILQF DLAETFNLYG STEDNPETIT  360
NLPAENLRIN PSPASTGRSV NIRNDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-498223619168NAC domain-containing protein 19
3swm_B3e-498223619168NAC domain-containing protein 19
3swm_C3e-498223619168NAC domain-containing protein 19
3swm_D3e-498223619168NAC domain-containing protein 19
3swp_A3e-498223619168NAC domain-containing protein 19
3swp_B3e-498223619168NAC domain-containing protein 19
3swp_C3e-498223619168NAC domain-containing protein 19
3swp_D3e-498223619168NAC domain-containing protein 19
3ulx_A3e-498223614168Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G052300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314077.20.0NAC domain-containing protein 102
TrEMBLB9HNX80.0B9HNX8_POPTR; Uncharacterized protein
STRINGPOPTR_0009s05700.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101121642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.17e-55NAC family protein