PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G052200.1
Common NamePOPTR_0009s05690g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 514aa    MW: 58005.5 Da    PI: 6.877
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G052200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM146.61.3e-451092342128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         ppG+rF P+d+elv +yL++kv+g +l+  + i +v +y+++P+ L  +  k +ekewyfF++rd+ky++g+r+nra++ gyWkatg dk+
  Potri.009G052200.1 109 PPGYRFCPHDHELVIHYLTNKVKGLPLPR-NKIVDVILYQYDPEYLAdRYQKFGEKEWYFFTPRDRKYKNGSRPNRAANGGYWKATGADKN 198
                         9**************************99.77**************9445555999*********************************** PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++ ++++vg +k Lv+y+g+apkg kt+W+mhe+r+
  Potri.009G052200.1 199 ITH-DEAVVGYRKALVYYTGKAPKGDKTNWIMHEFRV 234
                         ***.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-54105261IPR003441NAC domain
PROSITE profilePS5100552.383108261IPR003441NAC domain
PfamPF023652.2E-24109234IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MSSLEENSSE SPTMEFTEES MPNVEHSLTT PITPNITSNS SVSPPQILIN STSLPPPPAP  60
VPVPQPPSAT ASPSLVLQSP STFTLAAAAP PRPRFANDRD DDHYFNSFPP GYRFCPHDHE  120
LVIHYLTNKV KGLPLPRNKI VDVILYQYDP EYLADRYQKF GEKEWYFFTP RDRKYKNGSR  180
PNRAANGGYW KATGADKNIT HDEAVVGYRK ALVYYTGKAP KGDKTNWIMH EFRVNEPIPQ  240
VRNHRDDMRL DEWVLCRIYK KQEKRNNVRN EQRNEERTNV INEQRNEEHS SGSMDDIEED  300
YLHDHNSNDL AAMGADYAGE IYDMGTGSLE NAFPVFNELS QQPTALRGYS DGINFFPAPA  360
HHSRTLQDTQ VPNLAETFGN PAPVFPVDNW PYRQRGYQDE FLNHTNWSQV NIPGQSLDRY  420
SVKPTYLPGN PAPLVNLRPT NTARPPHGLP YMNTAPPAGS LPPRNTARPT GCLPPTNTPF  480
LTRRHPPTNP ANSQPTKLTD VDAKLPRRPP QHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-5510726216166NO APICAL MERISTEM PROTEIN
1ut4_B1e-5510726216166NO APICAL MERISTEM PROTEIN
1ut7_A1e-5510726216166NO APICAL MERISTEM PROTEIN
1ut7_B1e-5510726216166NO APICAL MERISTEM PROTEIN
3swm_A1e-5510726219169NAC domain-containing protein 19
3swm_B1e-5510726219169NAC domain-containing protein 19
3swm_C1e-5510726219169NAC domain-containing protein 19
3swm_D1e-5510726219169NAC domain-containing protein 19
3swp_A1e-5510726219169NAC domain-containing protein 19
3swp_B1e-5510726219169NAC domain-containing protein 19
3swp_C1e-5510726219169NAC domain-containing protein 19
3swp_D1e-5510726219169NAC domain-containing protein 19
4dul_A1e-5510726216166NAC domain-containing protein 19
4dul_B1e-5510726216166NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G052200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314078.10.0NAC transcription factor 25
TrEMBLB9HNX90.0B9HNX9_POPTR; Uncharacterized protein
STRINGPOPTR_0009s05690.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101121642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.24e-57NAC family protein