PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G044100.1
Common NamePOPTR_0009s04870g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 485aa    MW: 53530.8 Da    PI: 5.5003
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G044100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.1e-17140186148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT+eEd +l+++vkq+G + W+ Ia+++  gR +kqc++rw+++l
  Potri.009G044100.1 140 KGQWTEEEDRKLIRLVKQFGVRKWAQIAERVA-GRAGKQCRERWHNHL 186
                         799*****************************.*************97 PP
2Myb_DNA-binding56.18.8e-18192234145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         +++W++eE+ +lv+a+++ G++ W+ Ia+ ++ gRt++ +k++w+
  Potri.009G044100.1 192 KDSWSEEEEIILVEAHTKVGNR-WAEIAKLIP-GRTENAIKNHWN 234
                         679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.268135190IPR017930Myb domain
SuperFamilySSF466895.03E-30138233IPR009057Homeodomain-like
SMARTSM007172.6E-17139188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-27141193IPR009057Homeodomain-like
PfamPF139213.0E-19143201No hitNo description
CDDcd001671.45E-16143186No hitNo description
SMARTSM007172.6E-16191239IPR001005SANT/Myb domain
PROSITE profilePS5129420.473191241IPR017930Myb domain
CDDcd001676.55E-13194237No hitNo description
Gene3DG3DSA:1.10.10.601.4E-20194239IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MEGGGEGGGG GRFSHQSLQN NRSIYQPTPP LTATDRFLFC QSHYTPQNIE NDDKSKETLV  60
SINGLCGFSP PSGAIGAVPW QSFSETSFVD GLFVDGDSLN RAYDGNPNGG LSGEVNNVSG  120
KSCKGMGKKT KKGSCATLIK GQWTEEEDRK LIRLVKQFGV RKWAQIAERV AGRAGKQCRE  180
RWHNHLRPDI KKDSWSEEEE IILVEAHTKV GNRWAEIAKL IPGRTENAIK NHWNATKRRQ  240
NSRRKHKQTE SQSGKPQPSI LQDYIRSKNL KNASTSVTST QSTTTNTPSS SISEDPSSQF  300
NYFLPELSES ASDDSPSLLA QSCNDDELLF IQNFFGNKSK EPSSTDKVAT ENPTMEVDNF  360
NADSFNDSLD SSGLYQNSGC QQLKDLSDND FDISTLNPKL CTNGFQAVTD QQTPTYNHLH  420
SDLYLSYLLN GASNAPGSSY TEYGYSSTNM DMEMDQTHPL NGKKEMDLIE MISSSQFSQG  480
IDNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-471382402104C-Myb DNA-Binding Domain
1msf_C4e-471382402104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G044100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011032290.10.0PREDICTED: transcription factor MYB98
TrEMBLB9HP580.0B9HP58_POPTR; Uncharacterized protein
STRINGPOPTR_0009s04870.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.12e-69myb domain protein 119