PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G035000.1
Common NamePOPTR_0009s03990g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family G2-like
Protein Properties Length: 350aa    MW: 38379.3 Da    PI: 6.0911
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G035000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.91.3e-29159212155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         +prl+Wtp+LH+rFv++v +L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Potri.009G035000.1 159 RPRLVWTPQLHKRFVDVVGHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 212
                         59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.15E-19156216IPR009057Homeodomain-like
PROSITE profilePS512949.503156215IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-29158217IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-23160212IPR006447Myb domain, plants
PfamPF002495.0E-7162211IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGEEVKMSEY EINDGEENIN GDDERVAVWE IGLPTPDDLT PLSQTLIPPE LASAFSIFPE  60
PHRTPLDVNR ACQTTLSNLR GQLNALSSNN FKSFNETTGQ THDPIVVDLD NKTGAVDRDG  120
SGSEARKLRR VDSEEEDSAL RTDNSAEDPS SAAARTLKRP RLVWTPQLHK RFVDVVGHLG  180
IKNAVPKTIM QLMNVEGLTR ENVASHLQKY RLYLKRMQGL SSEGPSASDQ LFASTPLPQS  240
FPESSDGGGG GNGNFGIPIP MPYHHPATAG GMMPMPVYGH MGMQMGNNNG HNNNSSDNHQ  300
HHQVSINGHQ NGYNGNVVHG HMFQQRDWNG NHYGSYTHHP HQVAPNDNM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A7e-34159215157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is essential for the generation of the circadian clock oscillation. Is necessary for activation of CCA1 and LHY expression. Is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. Directly regulates the expression of PRR9, a major component of the morning transcriptional feedback circuit, by binding specific sites on PRR9 promoter. Binds to its own promoter, inducing a negative auto-regulatory feedback loop within the core clock. Binds to ELF3 and associates with ELF4 in a diurnal complex which is required for the expression of the growth-promoting transcription factors PIF4 and PIF5 and subsequent hypocotyl growth in the early evening. {ECO:0000269|PubMed:16006522, ECO:0000269|PubMed:16164597, ECO:0000269|PubMed:21236673, ECO:0000269|PubMed:21753751, ECO:0000269|PubMed:22311777}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00014PBMTransfer from AT3G46640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G035000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16006522, ECO:0000269|PubMed:16164597, ECO:0000269|PubMed:17132630, ECO:0000269|PubMed:21753751}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313898.30.0transcription factor BOA
RefseqXP_024464692.10.0transcription factor BOA
RefseqXP_024464693.10.0transcription factor BOA
RefseqXP_024464694.10.0transcription factor BOA
RefseqXP_024464695.10.0transcription factor BOA
RefseqXP_024464696.10.0transcription factor BOA
RefseqXP_024464697.10.0transcription factor BOA
SwissprotQ9SNB44e-85PCL1_ARATH; Transcription factor LUX
TrEMBLA0A2K1Z2660.0A0A2K1Z266_POPTR; Uncharacterized protein
STRINGPOPTR_0009s03990.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69573347
Representative plantOGRP11571753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.21e-82G2-like family protein
Publications ? help Back to Top
  1. Higham CF,Husmeier D
    A Bayesian approach for parameter estimation in the extended clock gene circuit of Arabidopsis thaliana.
    BMC Bioinformatics, 2013. 14 Suppl 10: p. S3
    [PMID:24267177]