PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G033300.1
Common NamePOPTR_0009s03850g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 714aa    MW: 80794.4 Da    PI: 5.4957
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G033300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3764.7e-1153397092374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +lL++cA+av+ gd++ a+++L+++++++s+ gd++qRla+yf++AL +rla++++ ++  +   +ts    +e l+a+++++ ++P+ +
  Potri.009G033300.1 339 SSLLIQCAQAVAIGDQRTASEILQQIRQHSSSFGDANQRLAHYFANALDTRLAGTTTPTFTLFVNPRTS---AAEILKAYQVYVRACPFKR 426
                         689***************************************************777777776555554...79***************** PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                         +s++ aN++Il+  ++++r+HiiDf+i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g   +e++eetg+rL++++e+++vpfe+ + 
  Potri.009G033300.1 427 MSNFFANRTILKLEKKATRLHIIDFGILYGFQWPCLIQRLSERPGGPPKLRITGIELPQPGfrPAERVEETGRRLERYCERFKVPFEYIP- 516
                         ************************************************************9*****************************. PP

                GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                         +a+++e++++e+L+++++E+++Vn+ ++l +l+d++   +s+rd+vLkl+++++P+++++   + + n++ F++rf eal+++s+lfd++e
  Potri.009G033300.1 517 IAQKWETIRYEDLKIDKDEKVVVNCLYRLRNLPDDTIVENSARDAVLKLINKIKPDMFIHGVVNGNFNAPFFVTRFREALYHFSSLFDMFE 607
                         7****************************************************************************************** PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                         a+++re+e+r++ E+e  gr+i+nv+aceg++r+er et+++W++r  +aGF++++l+++  k+++++++  +++ + v+ + +++++gWk
  Potri.009G033300.1 608 ATVSREDEHRMMFEKEQYGRDITNVIACEGKARVERPETYKQWQSRNLRAGFRQLSLDQELFKDVRSVVKSEYDKDFVVDADGQWVLQGWK 698
                         *************************************************************************999*************** PP

                GRAS 364 drpLvsvSaWr 374
                         +r ++++S+W+
  Potri.009G033300.1 699 GRIIYALSVWK 709
                         **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.69312689IPR005202Transcription factor GRAS
PfamPF035141.6E-112339709IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MDTLLQEYPN SMNRFMFDHA SVSFSSNRNL FNGYQLNDTM SDPNPSFNSF NPEPPNDSTS  60
SSSSSNSCSE GYGPSNNVTL KFISDVLLEE DLEGKTCMLQ DCLALQAAEK PFYDVLGQEY  120
PHSSNQILSC FDKKFESPDN GFTWSSGIDS SNSNPPGNNL VEKSDWIFDQ ADLDLYQVQT  180
SPVLPLERTL LAPDLHSPVH PHPFEVLSKG GGEADNFLSG NDYFMVSSKS NSSNPPDKDE  240
GDYSTNSSRG RKNHQREDSD DLEEERSKKH SALSPAESEL SELLDEVLLC PVAQNESTPC  300
SLLGNSQNGA AGNEQRKGSN GRTTRGKKRG KKGEVVDLSS LLIQCAQAVA IGDQRTASEI  360
LQQIRQHSSS FGDANQRLAH YFANALDTRL AGTTTPTFTL FVNPRTSAAE ILKAYQVYVR  420
ACPFKRMSNF FANRTILKLE KKATRLHIID FGILYGFQWP CLIQRLSERP GGPPKLRITG  480
IELPQPGFRP AERVEETGRR LERYCERFKV PFEYIPIAQK WETIRYEDLK IDKDEKVVVN  540
CLYRLRNLPD DTIVENSARD AVLKLINKIK PDMFIHGVVN GNFNAPFFVT RFREALYHFS  600
SLFDMFEATV SREDEHRMMF EKEQYGRDIT NVIACEGKAR VERPETYKQW QSRNLRAGFR  660
QLSLDQELFK DVRSVVKSEY DKDFVVDADG QWVLQGWKGR IIYALSVWKP VQE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-5034471025380Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G033300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2308540.0CU230854.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314168.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLB9HPF30.0B9HPF3_POPTR; Uncharacterized protein
STRINGPOPTR_0009s03850.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Representative plantOGRP26615129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-174SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]