PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G032900.1
Common NamePOPTR_0009s03810g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 659aa    MW: 74873.6 Da    PI: 5.6292
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G032900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS346.44.8e-1062866562374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         ++lL++cAeav+s+d+  a +lL++++++++p gd  qRla++f +AL+ar+a+++se+y++l++++ +   s++ l+a + f  +sP++ 
  Potri.009G032900.1 286 RTLLIHCAEAVASNDHGSAIELLTQIRQHSTPFGDGSQRLAHCFSNALEARMAGNGSEVYASLAANRVT---SERILKACRRFISASPFMV 373
                         679*********************************************************999998888...899999************* PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                         +s+l   q+I++  e++ r+Hii f+i + + Wp+L+q L+ Rp+gpp lRiTg++ p++g  s+e++ee+g  La+++++++vpfe+n+ 
  Potri.009G032900.1 374 MSNLFSTQTIMDLSENAARLHIINFGILYDFPWPSLIQHLSVRPGGPPVLRITGIEFPQTGyrSAETIEEIGLYLASYCDKFNVPFEYNA- 463
                         ************************************************************9*9***************************. PP

                GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                         +++++e+++le+L+++++E+++V++ ++  +llde+v l+ +r++vL+l+k+++P v+++   +  +ns+ F+ rf eal y+s+lfd+le
  Potri.009G032900.1 464 ISQKWENVQLEDLKIDRDEVTVVSSLYRFRHLLDETVVLNGHRNAVLNLIKRINPAVFIHGIVNGAYNSPFFVSRFREALFYFSSLFDMLE 554
                         7****************************************************************************************** PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                         a  +re+ er + E+e++g+ei nv+aceg +r+er e++++W++r  +aGF+++pl+e ++++++  ++  + + + ++++ +++++gWk
  Potri.009G032900.1 555 AITAREDPERLVFEQEVFGKEILNVIACEGCDRIERPEKYKQWQARNVRAGFRQLPLKEGIMEKVREQVKSSYHKDFLMDQDGQWMLQGWK 645
                         *************************************************************************888*************** PP

                GRAS 364 drpLvsvSaWr 374
                         +r L+++S+W+
  Potri.009G032900.1 646 GRILFAISCWK 656
                         **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.162259636IPR005202Transcription factor GRAS
PfamPF035141.6E-103286656IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MNPVFKDPTA DTVLKCISQI LMEEESNEQT FIARDFSLRA AEKPFSDILD QKSSSSDSEV  60
SDPNQIIKTV STHCCNIYGC NSSETADNMV VSSFIHNREA PSVNYTVPLS LQDNSPPFFP  120
ESIFQTFPEQ VDSSVNVALG ASQLDVLFKG GTEETWEFHH QANEMILDFE NNKVTPVMAT  180
KEKSYWDHSA CELKERKNHY KVEKKSETRR NKHSSVYAEA AEQYGMFAEV FPSSGGDDEP  240
VWLNLNETFQ NGPGMIPYLR EQSRGSNYGM LFRKNHVSCR ELVDTRTLLI HCAEAVASND  300
HGSAIELLTQ IRQHSTPFGD GSQRLAHCFS NALEARMAGN GSEVYASLAA NRVTSERILK  360
ACRRFISASP FMVMSNLFST QTIMDLSENA ARLHIINFGI LYDFPWPSLI QHLSVRPGGP  420
PVLRITGIEF PQTGYRSAET IEEIGLYLAS YCDKFNVPFE YNAISQKWEN VQLEDLKIDR  480
DEVTVVSSLY RFRHLLDETV VLNGHRNAVL NLIKRINPAV FIHGIVNGAY NSPFFVSRFR  540
EALFYFSSLF DMLEAITARE DPERLVFEQE VFGKEILNVI ACEGCDRIER PEKYKQWQAR  600
NVRAGFRQLP LKEGIMEKVR EQVKSSYHKD FLMDQDGQWM LQGWKGRILF AISCWKSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-4729165524377Protein SCARECROW
5b3h_D4e-4729165524377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G032900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2725010.0GU272501.1 Populus balsamifera isolate FRE01 haplotype A scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725020.0GU272502.1 Populus balsamifera isolate FRE01 haplotype B scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725030.0GU272503.1 Populus balsamifera isolate GAL12 haplotype A scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725040.0GU272504.1 Populus balsamifera isolate GAL12 haplotype B scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725050.0GU272505.1 Populus balsamifera isolate GIL14 haplotype A scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725060.0GU272506.1 Populus balsamifera isolate GIL14 haplotype B scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725070.0GU272507.1 Populus balsamifera isolate GPR02 haplotype A scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725080.0GU272508.1 Populus balsamifera isolate GPR02 haplotype B scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725090.0GU272509.1 Populus balsamifera isolate INU03 haplotype A scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725100.0GU272510.1 Populus balsamifera isolate INU03 haplotype B scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725110.0GU272511.1 Populus balsamifera isolate KUU07 haplotype A scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725120.0GU272512.1 Populus balsamifera isolate KUU07 haplotype B scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725130.0GU272513.1 Populus balsamifera isolate MGR10 haplotype A scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725140.0GU272514.1 Populus balsamifera isolate MGR10 haplotype B scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725150.0GU272515.1 Populus balsamifera isolate POR11 haplotype A scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725160.0GU272516.1 Populus balsamifera isolate POR11 haplotype B scarecrow-like transcription factor 9 gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314170.10.0scarecrow-like protein 14
TrEMBLB9HPF60.0B9HPF6_POPTR; Uncharacterized protein
STRINGPOPTR_0009s03810.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Representative plantOGRP26615129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-165SCARECROW-like 14