PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G032800.1
Common NamePOPTR_0009s03800g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 795aa    MW: 89013.7 Da    PI: 4.911
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G032800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3759.6e-1154177911373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lL+ cA+a+s++d++ a++lL+++++++sp gd +qRla++f+++L+arla+s++++ + +++ ++++++ ++ l+a+k+   ++P+ 
  Potri.009G032800.1 417 LRTLLILCAQAISANDFRTANELLKQIRQHSSPFGDGTQRLAHFFANGLEARLAGSGNGTPNFITSLASKRTTAADMLKAYKTQLRACPFK 507
                         5789*************************************************************************************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         k+s   a ++Il a+e+++++Hi+Df++ +G+QWp L+q+L+  p+gpp+lR+Tg++ p++g   +e++eetg+rLak++e+++vpfe+n+
  Potri.009G032800.1 508 KLSIAFAIKMILHAAEKATTLHIVDFGVLYGFQWPILIQQLSLLPNGPPKLRLTGIELPQHGfrPSERVEETGRRLAKYCERFKVPFEYNP 598
                         *************************************************************9***************************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                         ++a+++e++ +e+++++++E+laVn+  + ++llde+v+++ +rd+vLkl+++++P+++v++  + ++n++ Fl+rf eal  +s+lfd +
  Potri.009G032800.1 599 ITAQNWEKIPIEDIKINRNEVLAVNCLCRFKNLLDETVEVDCPRDAVLKLIRKMNPDIFVHTIINGSYNAPFFLTRFREALFQFSSLFDIF 689
                         ******************************************************************************************* PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         +++lpre++er++ Ere++g++++nv+aceg++r+er et+++W+ r  +aGFkp+p++++ +++++  l++++ + + v+e+++++++gW
  Potri.009G032800.1 690 DSTLPREDQERMMFEREFFGQDAMNVIACEGQDRVERPETYKQWQVRTVRAGFKPLPFDQELMTKVRGKLKNCYHKDFVVDEDNHWMLQGW 780
                         **************************************************************************889************** PP

                GRAS 363 kdrpLvsvSaW 373
                         k+r +++ S+W
  Potri.009G032800.1 781 KGRIIFASSCW 791
                         *********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.501391772IPR005202Transcription factor GRAS
PfamPF035143.3E-112417791IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    Send to blast
MVMDRNYTGL SDYQNDSKFD ETIMFSNSDQ YPVIEHGLEF NTPSPDLSFI NLDSDPDSFG  60
LSFNLNPAGE SSVPSMSLSP DGGLLDPSTG LSPEAEASSP SEDSDSTDPL LKYISQMLME  120
ENMKDQPHMF HDHFALSATE KSLYDALGEQ YPPPLNSSQS YLNHESPDSN ISGTGSNFGD  180
NTSSSNGIST VTSSFTTDFS KEPQWVGGDA DVGGSNPSFQ RISLLGDNHL QSNLRPNMQF  240
SASPYGFTDS RDSLMGSSAG EMVQNMFSDM ESVLQFKKGL EEASKFLPSA SQLVIDLETN  300
AFSTWKKEKT PRVVVKEEKS EADSSPNGSR GRKNHEREDS DPEEGRSNKQ SAVYVEEGEL  360
SEMFDKVLLW TGGQCCGNDA DQEVGCKSLQ PDEQSNGSSG GKNRAKRQNK RMETVDLRTL  420
LILCAQAISA NDFRTANELL KQIRQHSSPF GDGTQRLAHF FANGLEARLA GSGNGTPNFI  480
TSLASKRTTA ADMLKAYKTQ LRACPFKKLS IAFAIKMILH AAEKATTLHI VDFGVLYGFQ  540
WPILIQQLSL LPNGPPKLRL TGIELPQHGF RPSERVEETG RRLAKYCERF KVPFEYNPIT  600
AQNWEKIPIE DIKINRNEVL AVNCLCRFKN LLDETVEVDC PRDAVLKLIR KMNPDIFVHT  660
IINGSYNAPF FLTRFREALF QFSSLFDIFD STLPREDQER MMFEREFFGQ DAMNVIACEG  720
QDRVERPETY KQWQVRTVRA GFKPLPFDQE LMTKVRGKLK NCYHKDFVVD EDNHWMLQGW  780
KGRIIFASSC WVPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-464007931379Protein SCARECROW
5b3h_D1e-464007931379Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G032800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2089320.0AC208932.1 Populus trichocarpa clone JGIACSB1081-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314171.30.0scarecrow-like protein 33
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2K1Z2300.0A0A2K1Z230_POPTR; Uncharacterized protein
STRINGPOPTR_0009s03800.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Representative plantOGRP26615129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]