PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.009G027300.1 | ||||||||
Common Name | POPTR_0009s03240g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 244aa MW: 27515.8 Da PI: 7.3841 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.1 | 1.8e-17 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed ll++ v+++G ++W+ Ia+ g++Rt+k+c++rw +yl Potri.009G027300.1 10 KGPWTEQEDILLINFVNLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 57 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.5 | 5.3e-17 | 63 | 107 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++E+ l +++++++G++ W++Iar+++ gRt++++k++w+++ Potri.009G027300.1 63 RGKMTPQEERLVLELHARWGNR-WSRIARKLP-GRTDNEIKNYWRTH 107 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.586 | 5 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.8E-30 | 9 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-16 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-16 | 10 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-21 | 11 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.54E-12 | 12 | 57 | No hit | No description |
PROSITE profile | PS51294 | 25.532 | 58 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 6.8E-16 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 63 | 107 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-23 | 65 | 111 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.14E-12 | 65 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MKMMQDETRK GPWTEQEDIL LINFVNLFGD RRWDFIAKVS GLNRTGKSCR LRWVNYLHPG 60 LKRGKMTPQE ERLVLELHAR WGNRWSRIAR KLPGRTDNEI KNYWRTHTRK KAQERKSVVS 120 PSLSSSNCSS SSNITTVNSS SPPGTGEASF YDTGGLEQVA SAGKNGEAVQ GGEKGYSMDD 180 IWRDIENTIE PVCDGFSEEG CNFSYPSLAS PSWEYRPDIL WSISGEESKM FLPYDDGTML 240 LTG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 5e-28 | 2 | 112 | 50 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 5e-28 | 2 | 112 | 50 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.2779 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB48-1, isoform MYB48-3 and isoform MYB48-4 are present in all of these organs, but isoform MYB48-2 is confined to leaves. {ECO:0000269|PubMed:16531467}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.009G027300.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002313452.2 | 0.0 | transcription factor MYB48 isoform X2 | ||||
Swissprot | Q9LX82 | 4e-99 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | B9HPK9 | 0.0 | B9HPK9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s03240.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4378 | 33 | 59 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 9e-97 | myb domain protein 48 |
Link Out ? help Back to Top | |
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Phytozome | Potri.009G027300.1 |
Entrez Gene | 7488139 |
Publications ? help Back to Top | |||
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