PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.009G024900.2

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 442aa MW: 48863.8 Da PI: 8.6576

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.009G024900.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.2	6.4e-05	385	404	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ CgksF r++ L++H++++ Potri.009G024900.2 385 CSRCGKSF-RPEKLHSHMKSC 404 ******.********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	4.0E-43	22	312	IPR010369	Protein of unknown function DUF966

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MEASSGIPLK SSSGAGGEVR RIHIIYFLSH NLGRFEHPHL IRVHHFNLNG VYLRDVKRWL 60 ADLRGKDMPK AFAWSYKRRY KKGYVWQDLL DDDLITPISD NEYVLKGSEI FVPPANPLAG 120 SAYGEKKAAD LLMKSENDSQ VENTEVENKA QDHEQLPSPN QICDDTTPRK TTSSEISEES 180 PVFSSEISTV TDDSIKEEED ACKPSNPLEE EQIDIKVEQY SSFYTNFLGS KSKKNQKKRV 240 DNNSNIEKMG TPSSFSSLSS STSSSQATFA KSKSYSSGTS KMLRNLMTCG AVDTNDAALV 300 RQGQKCNSKY KPIEKPADQI CEGEVLGGPA RVFATPWNQQ IQQHDIANAS RKSYDEARGS 360 KKQPGGFGSP KVIPPAYKPV AAPICSRCGK SFRPEKLHSH MKSCRGLKTL TKAASAYVEK 420 TPSPSHISVD SKSEDGYFLT K*

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MEASSGIPLK SSSGAGGEVR RIHIIYFLSH NLGRFEHPHL IRVHHFNLNG VYLRDVKRWL  60
ADLRGKDMPK AFAWSYKRRY KKGYVWQDLL DDDLITPISD NEYVLKGSEI FVPPANPLAG  120
SAYGEKKAAD LLMKSENDSQ VENTEVENKA QDHEQLPSPN QICDDTTPRK TTSSEISEES  180
PVFSSEISTV TDDSIKEEED ACKPSNPLEE EQIDIKVEQY SSFYTNFLGS KSKKNQKKRV  240
DNNSNIEKMG TPSSFSSLSS STSSSQATFA KSKSYSSGTS KMLRNLMTCG AVDTNDAALV  300
RQGQKCNSKY KPIEKPADQI CEGEVLGGPA RVFATPWNQQ IQQHDIANAS RKSYDEARGS  360
KKQPGGFGSP KVIPPAYKPV AAPICSRCGK SFRPEKLHSH MKSCRGLKTL TKAASAYVEK  420
TPSPSHISVD SKSEDGYFLT K*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.009G024900.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024464115.1	0.0	uncharacterized protein LOC7488155 isoform X1
Refseq	XP_024464116.1	0.0	uncharacterized protein LOC7488155 isoform X1
TrEMBL	A0A2K1Z1N7	0.0	A0A2K1Z1N7_POPTR; Uncharacterized protein
STRING	POPTR_0009s02980.1	0.0	(Populus trichocarpa)

Link Out ? help Back to Top
Phytozome	Potri.009G024900.2