PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.009G024900.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 468aa MW: 52150.8 Da PI: 9.1611

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.009G024900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.8e-05	411	430	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ CgksF r++ L++H++++ Potri.009G024900.1 411 CSRCGKSF-RPEKLHSHMKSC 430 ******.********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	3.5E-43	49	339	IPR010369	Protein of unknown function DUF966

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MWLLAVIWII SLSESYRIEK KERRSKRMEA SSGIPLKSSS GAGGEVRRIH IIYFLSHNLG 60 RFEHPHLIRV HHFNLNGVYL RDVKRWLADL RGKDMPKAFA WSYKRRYKKG YVWQDLLDDD 120 LITPISDNEY VLKGSEIFVP PANPLAGSAY GEKKAADLLM KSENDSQVEN TEVENKAQDH 180 EQLPSPNQIC DDTTPRKTTS SEISEESPVF SSEISTVTDD SIKEEEDACK PSNPLEEEQI 240 DIKVEQYSSF YTNFLGSKSK KNQKKRVDNN SNIEKMGTPS SFSSLSSSTS SSQATFAKSK 300 SYSSGTSKML RNLMTCGAVD TNDAALVRQG QKCNSKYKPI EKPADQICEG EVLGGPARVF 360 ATPWNQQIQQ HDIANARKSY DEARGSKKQP GGFGSPKVIP PAYKPVAAPI CSRCGKSFRP 420 EKLHSHMKSC RGLKTLTKAA SAYVEKTPSP SHISVDSKSE DGYFLTK*

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MWLLAVIWII SLSESYRIEK KERRSKRMEA SSGIPLKSSS GAGGEVRRIH IIYFLSHNLG  60
RFEHPHLIRV HHFNLNGVYL RDVKRWLADL RGKDMPKAFA WSYKRRYKKG YVWQDLLDDD  120
LITPISDNEY VLKGSEIFVP PANPLAGSAY GEKKAADLLM KSENDSQVEN TEVENKAQDH  180
EQLPSPNQIC DDTTPRKTTS SEISEESPVF SSEISTVTDD SIKEEEDACK PSNPLEEEQI  240
DIKVEQYSSF YTNFLGSKSK KNQKKRVDNN SNIEKMGTPS SFSSLSSSTS SSQATFAKSK  300
SYSSGTSKML RNLMTCGAVD TNDAALVRQG QKCNSKYKPI EKPADQICEG EVLGGPARVF  360
ATPWNQQIQQ HDIANARKSY DEARGSKKQP GGFGSPKVIP PAYKPVAAPI CSRCGKSFRP  420
EKLHSHMKSC RGLKTLTKAA SAYVEKTPSP SHISVDSKSE DGYFLTK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.009G024900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024464118.1	0.0	uncharacterized protein LOC7488155 isoform X2
TrEMBL	A0A2K1Z1N7	0.0	A0A2K1Z1N7_POPTR; Uncharacterized protein
STRING	POPTR_0009s02980.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8378	16	20
Representative plant	OGRP8665	3	5

Link Out ? help Back to Top
Phytozome	Potri.009G024900.1