PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.009G023100.3

Common Name

POPTR_0009s02810g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB_related

Protein Properties

Length: 335aa MW: 37084.6 Da PI: 5.1353

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.009G023100.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.4	4.4e-10	15	65	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwq 45 + W t+E++ll+ avk++G ++W++++ +++ t+++c+ +++ Potri.009G023100.3 15 QTWGTWEELLLASAVKRHGFKNWDSVSLEIQtktslplVLTTPENCQQKYH 65 68*****************************76666664456667766666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.11	9	68	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.1E-4	9	66	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.17E-5	10	67	IPR009057	Homeodomain-like
SMART	SM00717	2.4E-5	13	70	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-9	15	66	IPR001005	SANT/Myb domain
CDD	cd00167	1.72E-5	16	67	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MAIEEEGKHK NQNQQTWGTW EELLLASAVK RHGFKNWDSV SLEIQTKTSL PLVLTTPENC 60 QQKYHDLNHR FNTNNKLHHH TRKPPDFQEQ HNNINTADNS NTTNKHVNIP WLEELRQLRV 120 AELKQEVQRY DVSILTLQLK VKRLEEERER SVQGGDGNTQ KSDLKEERPE IEKEHESGKP 180 VSVSGEESDW ENRSVNESNS TGTGGKGGGE DAVGELEKLE PVRSGSGEPD PVMSGSNRKE 240 VEEGGGGGGD GGEGSCEVGD SVNQLSSESL SSGRKRKGRE SKEFSVTGGD ETVVVCSVKS 300 EPLVGFLEMI RAHKNGSLFE SLLENQVRVG FSFT*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.15625	0.0	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.009G023100.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF148191	0.0	EF148191.1 Populus trichocarpa clone WS0128_J05 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024464670.1	0.0	uncharacterized protein LOC7489296
TrEMBL	A0A2K1Z1J1	0.0	A0A2K1Z1J1_POPTR; Uncharacterized protein
STRING	POPTR_0009s02810.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	4e-44	DNA-binding bromodomain-containing protein

Link Out ? help Back to Top
Phytozome	Potri.009G023100.3
Entrez Gene	7489296