PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G023100.1
Common NamePOPTR_0009s02810g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 656aa    MW: 72509.1 Da    PI: 10.1535
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G023100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.49.1e-101565245
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwq 45
                        + W t+E++ll+ avk++G ++W++++ +++          t+++c+ +++
  Potri.009G023100.1 15 QTWGTWEELLLASAVKRHGFKNWDSVSLEIQtktslplVLTTPENCQQKYH 65
                        68*****************************66666664456666666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-4966IPR009057Homeodomain-like
PROSITE profilePS500906.11968IPR017877Myb-like domain
SuperFamilySSF466893.26E-51067IPR009057Homeodomain-like
SMARTSM007172.4E-51370IPR001005SANT/Myb domain
PfamPF002493.2E-91566IPR001005SANT/Myb domain
CDDcd001672.61E-51667No hitNo description
SMARTSM002973.9E-15296401IPR001487Bromodomain
SuperFamilySSF473703.4E-16302404IPR001487Bromodomain
Gene3DG3DSA:1.20.920.103.0E-14306401IPR001487Bromodomain
PfamPF004397.9E-10309385IPR001487Bromodomain
PROSITE profilePS5001412.057311382IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MAIEEEGKHK NQNQQTWGTW EELLLASAVK RHGFKNWDSV SLEIQTKTSL PLVLTTPENC  60
QQKYHDLNHR FNTNNKLHHH TRKPPDFQEQ HNNINTADNS NTTNKHVNIP WLEELRQLRV  120
AELKQEVQRY DVSILTLQLK VKRLEEERER SVQGGDGNTQ KSDLKEERPE IEKEHESGKP  180
VSVSGEESDW ENRSVNESNS TGTGGKGGGE DAVGELEKLE PVRSGSGEPD PVMSGSNRKE  240
VEEGGGGGGD GGEGSCEVGD SVNQLSSESL SSGRKRKGRE SKEFSVTGGD ETVVVCSVKS  300
EPLVGFLEMI RAHKNGSLFE SLLENQEMDV YKDMIRQHMD LEAIQTKLEQ GSYSSSSLLF  360
FRDLLLLFNN ALVFFPKHSV QSLAAHELRS LVSNEMRKET HSSDSSVMPE NIPPQPKSEL  420
ERSDSLLAKH KSSIPVIVCR KRSSISVKPS SSSLGQKIEQ QQQQSNENKS VNDLKPPTVE  480
QGLLKKKSDE KPVTGARSTR RGKKNLAKGS SPPSKKQNTS PDSKAVVPDK PETPKIEKKK  540
GEALTLEKKK SAVDFLKRIK KNSPAETPKK NSRVASNGGG ERKKEGSGGK GETGKDRVLR  600
KSSEKKPGKQ ESSPAKRNVG RPSKKAAEVS RVSGKRGRDI GGKEAAKKPR KRSRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1646654KKPRKRSRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.156250.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G023100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1481910.0EF148191.1 Populus trichocarpa clone WS0128_J05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464670.10.0uncharacterized protein LOC7489296
TrEMBLU5GV420.0U5GV42_POPTR; Uncharacterized protein
STRINGPOPTR_0009s02810.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Representative plantOGRP38051123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.13e-86DNA-binding bromodomain-containing protein