PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G019200.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 251aa    MW: 28206.6 Da    PI: 8.2062
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G019200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM140.69.3e-4441351128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                         lp G+rF Pt+eelv++yL++k+eg++ el++vi+e+ iy++eP dLp+     +++++++w+fF++r+ ++a+g r+nr+t++gyWkatg
  Potri.009G019200.1   4 LPLGYRFYPTEEELVSFYLHNKLEGTRQELQRVIPEISIYDIEPGDLPQlsgeLCRGNTEQWFFFTPRQAREARGGRPNRTTATGYWKATG 94 
                         699***************************99****************656654445778******************************* PP

                 NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +   v+s++++++glkkt+vfy g+ap+g+kt+W m+eyr+
  Potri.009G019200.1  95 SPGYVYSSDNRVIGLKKTMVFYIGKAPTGRKTKWKMNEYRA 135
                         ***************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-473160IPR003441NAC domain
PROSITE profilePS5100547.1614161IPR003441NAC domain
PfamPF023651.2E-235134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEELPLGYRF YPTEEELVSF YLHNKLEGTR QELQRVIPEI SIYDIEPGDL PQLSGELCRG  60
NTEQWFFFTP RQAREARGGR PNRTTATGYW KATGSPGYVY SSDNRVIGLK KTMVFYIGKA  120
PTGRKTKWKM NEYRAIEVHE SSRNATSKLR HEFSLCRVYV VSGSFRAFDR RPLEAVTRGT  180
QHLLRGTHVG DAATTPAQDP ITVEMTSSPE TSYSGGDHVD YPGTAASANW GLILHGNDRN  240
NWIGPAQIDL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-38415917163NO APICAL MERISTEM PROTEIN
1ut4_B3e-38415917163NO APICAL MERISTEM PROTEIN
1ut7_A3e-38415917163NO APICAL MERISTEM PROTEIN
1ut7_B3e-38415917163NO APICAL MERISTEM PROTEIN
3swm_A3e-38415920166NAC domain-containing protein 19
3swm_B3e-38415920166NAC domain-containing protein 19
3swm_C3e-38415920166NAC domain-containing protein 19
3swm_D3e-38415920166NAC domain-containing protein 19
3swp_A3e-38415920166NAC domain-containing protein 19
3swp_B3e-38415920166NAC domain-containing protein 19
3swp_C3e-38415920166NAC domain-containing protein 19
3swp_D3e-38415920166NAC domain-containing protein 19
4dul_A3e-38415917163NAC domain-containing protein 19
4dul_B3e-38415917163NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G019200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464634.10.0NAC domain-containing protein 90
SwissprotQ9FMR38e-85NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A2K1Z1D10.0A0A2K1Z1D1_POPTR; Uncharacterized protein
STRINGPOPTR_0009s02430.11e-165(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Representative plantOGRP22781136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.27e-88NAC domain containing protein 61
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]