PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.009G018700.1 | ||||||||
Common Name | POPTR_0009s02380g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 517aa MW: 56618.2 Da PI: 4.8423 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.3 | 1.5e-17 | 40 | 87 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +l+d+vk++G g+W+++ ++ g+ R++k+c++rw ++l Potri.009G018700.1 40 KGPWTSAEDAILIDYVKKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 87 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 50.5 | 4.6e-16 | 93 | 136 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ +++++++ +G++ W++ a++++ gRt++++k++w++ Potri.009G018700.1 93 KGAFTPEEENRIIELHATMGNK-WARMAAELP-GRTDNEIKNYWNT 136 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.705 | 35 | 87 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.36E-30 | 37 | 134 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-15 | 39 | 89 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-24 | 41 | 94 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.57E-12 | 42 | 87 | No hit | No description |
Pfam | PF13921 | 1.7E-15 | 43 | 103 | No hit | No description |
PROSITE profile | PS51294 | 25.256 | 88 | 142 | IPR017930 | Myb domain |
SMART | SM00717 | 6.6E-16 | 92 | 140 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.87E-11 | 95 | 136 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 95 | 140 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 517 aa Download sequence Send to blast |
MSSMMNGSED SKRSKDCRDS PAADEANGGE MMGGMIPLKK GPWTSAEDAI LIDYVKKHGE 60 GNWNAVQKHS GLFRCGKSCR LRWANHLRPD LKKGAFTPEE ENRIIELHAT MGNKWARMAA 120 ELPGRTDNEI KNYWNTRIKR LQRTGLPIYP SDVCLQLYKT IQDGQNMGTL QTGDTCDPDL 180 MQTDHFKIPE VEFKNLELSQ DVLSYSSVLF DTSPSSMLKQ GVGSSYGNAL VFPTIHPAKR 240 LRESQTIFTG LDGCVGRGMP VFDQLTDYPC GKIIEHSGLS SPYDPDLSTY DQPSWDVLPG 300 SHAILNDNSS SSNVPICGTM KLELPSLQYS ESQQDSWGTP TSPLPSLESV DTLIQSPPTK 360 EMRSDGQSPR SSGLLEAVLY EYRTLKNSKK CSGHPTSDVS VVFGGVNVSP LNTSATEWEV 420 YADLNSPSGH SASSLFSECT PVSGSSPDGR AYNVEPEPVD QDLIPYVEAR KAPNQTDCNR 480 PDVLLGSAWF APSNNCHKDQ FFQTDDVVAV LGGDQP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-31 | 34 | 140 | 1 | 106 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.009G018700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002313492.2 | 0.0 | transcription factor GAMYB | ||||
TrEMBL | A0A2K1Z1C5 | 0.0 | A0A2K1Z1C5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s02380.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2047 | 34 | 85 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.3 | 1e-90 | myb domain protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Potri.009G018700.1 |
Entrez Gene | 7491110 |