PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.009G018500.1

Common Name

POPTR_0009s02360g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bZIP

Protein Properties

Length: 270aa MW: 30460.3 Da PI: 9.8907

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.009G018500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	38.8	2.1e-12	199	243	5	49
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 ++ +rk+kNRe+A rsR+RK+a+ eL k+ L +eN +Lkke Potri.009G018500.1 199 RKLKRKIKNRESAARSRARKQAYHNELVSKISHLGEENIKLKKEK 243 45799*************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-8	195	267	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.025	197	242	IPR004827	Basic-leucine zipper domain
CDD	cd14707	4.62E-13	199	236	No hit	No description
Pfam	PF00170	2.7E-10	199	244	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.88E-10	199	245	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.4E-11	199	243	No hit	No description
PROSITE pattern	PS00036	0	202	217	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MGVQTMASQR NGQQSHLQPY RLTRQNSWYN LTLNEVENQL GNLGKPLCSM NLDELLKNVW 60 STEAHQSVGM DSESTSMSSL QHQASLTLAR ALSGKTVDQV WKEIQQGQEK RFGEEMKVQE 120 REQTLGEMTL EDFLVQAGLF AKATISPSLD LVTVDAVTPQ SFSQKMVLSS SPSTSTLSDT 180 TTSGRKRDTP DAFEKSIERK LKRKIKNRES AARSRARKQA YHNELVSKIS HLGEENIKLK 240 KEKEFEKKFP IEPSAEQKYQ LRRTSSTSF*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269\|PubMed:15642716}.
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269\|PubMed:12376636}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.009G018500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002313493.2	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X2
Swissprot	Q9LES3	3e-62	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	B9HPX0	0.0	B9HPX0_POPTR; BZIP family protein
STRING	POPTR_0009s02360.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12464	25	32
Representative plant	OGRP540	15	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	4e-48	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	Potri.009G018500.1
Entrez Gene	7491111

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]