PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G014800.1
Common NamePOPTR_0009s02020g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 692aa    MW: 76668.7 Da    PI: 7.6676
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G014800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.55.9e-24113214199
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f k+lt+sd+++ g +++p+ +ae++      +++++ + t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   
  Potri.009G014800.1 113 FAKTLTQSDANNGGGFSVPRYCAETIfprldySSDPPLQ-TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL-- 200
                         89*****************************96666664.9************************************************.. PP

                         SSSEE..EEEEE-S CS
                  B3  86 grsefelvvkvfrk 99 
                         + +++ l+v+++r+
  Potri.009G014800.1 201 RAENGDLRVGIRRS 214
                         4488889****996 PP
2Auxin_resp114.78.2e-38275357283
          Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         a  a+++++F+vvY+Pr+st+eF+vk+++v++a+++ ++ GmRfkmafetedss++++ +Gtv++v+ +dpvrWpnS+Wr+L+
  Potri.009G014800.1 275 AGLAANGKPFQVVYYPRSSTPEFCVKASSVRAAMRIGWCSGMRFKMAFETEDSSRISWfMGTVTSVQVADPVRWPNSPWRLLQ 357
                         66799****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-37107217IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.15E-29108215IPR015300DNA-binding pseudobarrel domain
CDDcd100172.06E-21112213No hitNo description
SMARTSM010191.9E-22113215IPR003340B3 DNA binding domain
PfamPF023624.1E-22113214IPR003340B3 DNA binding domain
PROSITE profilePS5086313.084113215IPR003340B3 DNA binding domain
PfamPF065071.2E-32274357IPR010525Auxin response factor
PROSITE profilePS5174516.615596677IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MKETEKKSLD PQLWQACAGS MVHIPPLNST VFYFPQGHAE HSQSPVNFPQ RIPSLILCRV  60
ATVKFLADPD TDEVYAKIGF VPLPNTDLDF AHDRGLCGNG NDGDSCPDKP ASFAKTLTQS  120
DANNGGGFSV PRYCAETIFP RLDYSSDPPL QTVIAKDVHG EVWKFRHIYR GTPRRHLLTT  180
GWSTFVNQKK LVAGDSIVFL RAENGDLRVG IRRSKRGIGI GSRPESSLTT GWNSNNATCA  240
IPYDGFSLFV KEDEMRNGGM KGRGRVKPEE VLEAAGLAAN GKPFQVVYYP RSSTPEFCVK  300
ASSVRAAMRI GWCSGMRFKM AFETEDSSRI SWFMGTVTSV QVADPVRWPN SPWRLLQVAW  360
DEPDLLQNVK RVSPWLVELV SNMPVIHLSP FSPPRKKSRF PQQLGFPLDL QFQLPSFSGN  420
PLGPSSPMCC LSDNTPAGIQ GARHAQFGIS LSDIQFNNKQ QSGMFLSSLQ RFNPHSRNSE  480
TYLTGHTNSN ENISCLLTMG NSNPNLEKSD NVKKHQFLLF GQPILIEQHI SHSCSTDAVS  540
QVINERNSSD ESSSKEKISD VLLSAPGKKI SQVKSCGTGF SWHQSLHNTS EIGKDTGPCK  600
VFLESEDVGW TLDLSALCSY EELHGKLANM FGIERSEMSS HVLYRDATGS VKQIGDEPFS  660
VFMKTAKRLT ILMNQPSTES WEEMDHRDAK C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-79437846388Auxin response factor 5
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G014800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313508.30.0auxin response factor 18 isoform X1
RefseqXP_024464834.10.0auxin response factor 18 isoform X1
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2K1Z1400.0A0A2K1Z140_POPTR; Auxin response factor
STRINGPOPTR_0009s02020.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]