PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G012300.2
Common NamePOPTR_0009s01750g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YC
Protein Properties Length: 211aa    MW: 23617.6 Da    PI: 10.0563
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G012300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC32.81.5e-101091921499
               NF-YC  14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                         +d    ++P+arik+i+k+++  + +s ++  l+ ka e f+ +++  ++  + + ++++l    ++  v++   fdfl d vp++
  Potri.009G012300.2 109 EDGTACRFPMARIKRIIKSEDSESLLSQDVVFLVNKATEKFLEQFSDEAYDYSVQDRKKSLAYKHLF--VSKRRRFDFLSDFVPEK 192
                         5666778******************************************************999886..889999********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008083.6E-16115174IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.9E-19116191IPR009072Histone-fold
SuperFamilySSF471131.29E-13116190IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MERVAKSKRE MKKKRSSSKE VVVVTKSKQE KKKSKSKTGN SSPREPVVLL LSSSSSSSSD  60
SQELIEIEGE DDETNSGIKN RSMKSSKIKS ANNAKRKGKD DDLDGEGEED GTACRFPMAR  120
IKRIIKSEDS ESLLSQDVVF LVNKATEKFL EQFSDEAYDY SVQDRKKSLA YKHLFVSKRR  180
RFDFLSDFVP EKLNAKDALA DRTLAMTGQG *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164180RKKSLAYKHLFVSKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G012300.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2257761e-41CU225776.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464079.11e-148NKAP family protein CG6066 isoform X2
TrEMBLB9HQA81e-120B9HQA8_POPTR; Uncharacterized protein
STRINGPOPTR_0009s01750.11e-121(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.11e-30nuclear factor Y, subunit C10