PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.009G012300.2 | ||||||||
Common Name | POPTR_0009s01750g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NF-YC | ||||||||
Protein Properties | Length: 211aa MW: 23617.6 Da PI: 10.0563 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 32.8 | 1.5e-10 | 109 | 192 | 14 | 99 |
NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 +d ++P+arik+i+k+++ + +s ++ l+ ka e f+ +++ ++ + + ++++l ++ v++ fdfl d vp++ Potri.009G012300.2 109 EDGTACRFPMARIKRIIKSEDSESLLSQDVVFLVNKATEKFLEQFSDEAYDYSVQDRKKSLAYKHLF--VSKRRRFDFLSDFVPEK 192 5666778******************************************************999886..889999********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 3.6E-16 | 115 | 174 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.9E-19 | 116 | 191 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.29E-13 | 116 | 190 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MERVAKSKRE MKKKRSSSKE VVVVTKSKQE KKKSKSKTGN SSPREPVVLL LSSSSSSSSD 60 SQELIEIEGE DDETNSGIKN RSMKSSKIKS ANNAKRKGKD DDLDGEGEED GTACRFPMAR 120 IKRIIKSEDS ESLLSQDVVF LVNKATEKFL EQFSDEAYDY SVQDRKKSLA YKHLFVSKRR 180 RFDFLSDFVP EKLNAKDALA DRTLAMTGQG * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 164 | 180 | RKKSLAYKHLFVSKRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.009G012300.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU225776 | 1e-41 | CU225776.1 Populus EST from leave. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024464079.1 | 1e-148 | NKAP family protein CG6066 isoform X2 | ||||
TrEMBL | B9HQA8 | 1e-120 | B9HQA8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s01750.1 | 1e-121 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 1e-30 | nuclear factor Y, subunit C10 |
Link Out ? help Back to Top | |
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Phytozome | Potri.009G012300.2 |
Entrez Gene | 7491140 |