PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.009G012300.1 | ||||||||
Common Name | POPTR_0009s01750g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NF-YC | ||||||||
Protein Properties | Length: 213aa MW: 23757.8 Da PI: 10.0563 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 41.2 | 3.6e-13 | 109 | 194 | 14 | 99 |
NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 +d ++P+arik+i+k+++ + +s ++ l+ ka e f+ +++ ++ + + ++++l ++++v++ fdfl d vp++ Potri.009G012300.1 109 EDGTACRFPMARIKRIIKSEDSESLLSQDVVFLVNKATEKFLEQFSDEAYDYSVQDRKKSLAYKHLSTVVSKRRRFDFLSDFVPEK 194 5666778****************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.02E-16 | 97 | 194 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.5E-17 | 115 | 178 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 6.9E-23 | 116 | 193 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MERVAKSKRE MKKKRSSSKE VVVVTKSKQE KKKSKSKTGN SSPREPVVLL LSSSSSSSSD 60 SQELIEIEGE DDETNSGIKN RSMKSSKIKS ANNAKRKGKD DDLDGEGEED GTACRFPMAR 120 IKRIIKSEDS ESLLSQDVVF LVNKATEKFL EQFSDEAYDY SVQDRKKSLA YKHLSTVVSK 180 RRRFDFLSDF VPEKLNAKDA LADRTLAMTG QG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 164 | 182 | RKKSLAYKHLSTVVSKRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.009G012300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU225776 | 9e-58 | CU225776.1 Populus EST from leave. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002313518.1 | 1e-150 | DNA polymerase epsilon subunit C isoform X1 | ||||
TrEMBL | B9HQA8 | 1e-148 | B9HQA8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s01750.1 | 1e-149 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12016 | 30 | 31 | Representative plant | OGRP8670 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 3e-34 | nuclear factor Y, subunit C10 |
Link Out ? help Back to Top | |
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Phytozome | Potri.009G012300.1 |
Entrez Gene | 7491140 |