PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.009G011800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ARF | ||||||||
Protein Properties | Length: 756aa MW: 83910.5 Da PI: 6.9833 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.5 | 1.2e-23 | 153 | 254 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++p++ ae++ + +++ s++l +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F Potri.009G011800.1 153 FCKTLTASDTSTHGGFSVPRRAAEDCfpsldyK-QQRPSQELLAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL-- 240 99****************************963.3445679************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 + +++el+++++r+ Potri.009G011800.1 241 RGEGGELRLGIRRA 254 4499*******996 PP | |||||||
2 | Auxin_resp | 114.4 | 1e-37 | 279 | 360 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+stksvF+v Y+Pra+++ Fvv+++k+ k++++ v++G+Rfkm+fe++ds+err+sG+v+g+ dldp++WpnSkWr+L Potri.009G011800.1 279 VSNAISTKSVFTVSYSPRATHAVFVVPYQKYIKSITNAVCIGTRFKMRFEMDDSPERRCSGVVTGTADLDPYKWPNSKWRCL 360 5799*****************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.0E-40 | 143 | 265 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.83E-43 | 145 | 260 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.03E-21 | 151 | 253 | No hit | No description |
PROSITE profile | PS50863 | 12.872 | 153 | 255 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.1E-22 | 153 | 255 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-21 | 153 | 254 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.2E-32 | 279 | 360 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.4E-5 | 638 | 734 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 6.87E-10 | 644 | 729 | No hit | No description |
PROSITE profile | PS51745 | 22.527 | 650 | 732 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 756 aa Download sequence Send to blast |
MEIDLNHPVT EVEKNSFCTN GDSSCSSNSS SSPVSSSIYL ELWHACAGPL TSLPKKGNVV 60 VYFPQGHLEQ LASSSPFSHR DMPNFDLHPQ IFCKVVNVQL LANRENDEVY TRLTLLPQPE 120 VVGQDLEGKE LQELGVDGEG DDASPTKSTP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP 180 SLDYKQQRPS QELLAKDLHG VEWRFRHIYR GQPRRHLLTT GWSIFVSQKN LVSGDAVLFL 240 RGEGGELRLG IRRAARPRNG LPDSVTGKQN SLPSALSLVS NAISTKSVFT VSYSPRATHA 300 VFVVPYQKYI KSITNAVCIG TRFKMRFEMD DSPERRCSGV VTGTADLDPY KWPNSKWRCL 360 MVRWDEDVIS DHQERVSPWE IDASVSLPPL IIQSSPRLKK LRTGLQAAPP DKPIAGGGGF 420 LDFKESVRSS KVLQGQENVG LLSPVYRCDT VNHPLDFEVR NKAQQNLILT GIEKAKISEL 480 TRAHPATHTG FTESDRFLKV LQGQEICSLS SVGALGKPNT GRSSFQMYPG PRPAFYPVAA 540 ESLRSMYFPY GDVYKNGQDP RTQSYAIFSR ENAHFNTSSI QTCVVREEVR KPNQSSEYKT 600 QESISAAPAL CANLRNQKDD FFNGNATGCK LFGFSLNAET SPNSQNTSKR SCTKVHKQGS 660 LVGRAIDLSR LNGYSDLLNE LERLFSMEGL LRNPEEGWRI LYTDSENDVM VVGDDPWLEF 720 CNVATKIHIY TQEEVEKMTV GITGDDTQSC LDQAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-116 | 24 | 382 | 2 | 353 | Auxin response factor 1 |
4ldy_B | 1e-116 | 24 | 382 | 2 | 353 | Auxin response factor 1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.13122 | 7e-59 | leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.009G011800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF144735 | 5e-56 | EF144735.1 Populus trichocarpa clone WS01117_J13 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024464633.1 | 0.0 | LOW QUALITY PROTEIN: auxin response factor 4 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | A0A3N7FHN9 | 0.0 | A0A3N7FHN9_POPTR; Auxin response factor | ||||
STRING | XP_002526369.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5236 | 32 | 52 | Representative plant | OGRP10049 | 8 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Potri.009G011800.1 |