PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G009900.1
Common NamePOPTR_0009s01530g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 812aa    MW: 89741.6 Da    PI: 6.6117
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G009900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.97.9e-096366731954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +++  LA+++gL+  qV++WF N R +
  Potri.009G009900.1 636 FEHflHPYPTDTDKHMLATQTGLSRYQVSNWFINARVR 673
                         554458******************************88 PP
2BELL79.16.2e-26497565472
                BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         e q+ kakLl l++eV +rYkqy++q+++v+s Fe vagl +a+ Y+s+A ka+S +Fr++k  i++q+
  Potri.009G009900.1 497 EYQQMKAKLLYLQDEVLRRYKQYHQQMEMVASFFESVAGLSAATQYISMAVKAVSGNFRSIKHCISDQL 565
                         67999*************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.7E-26399563IPR006563POX domain
PfamPF075263.5E-35404562IPR006563POX domain
CDDcd000865.64E-11617678No hitNo description
SMARTSM003892.8E-8617681IPR001356Homeobox domain
SuperFamilySSF466891.45E-16619683IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.2E-27620681IPR009057Homeodomain-like
PfamPF059201.3E-17634673IPR008422Homeobox KN domain
PROSITE profilePS5007111.467636677IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
METKSFQPET HVAQRSRRDK LRFQQSLTSV QHLEDFGNDL DQLAVDPLLT PDLVQVRHSR  60
NGNMLYDPTF LSSAMLDFAT SSNVLSAQRG GMVDQELGPA HLHSPIAADD SSFTNMPQPV  120
LSNLNASPTA SNGDAQGCGN WTKLGSEQGY DLTVDYTGGS VVGERNQKLM SAVEVLSNNA  180
RVTDISTYTQ YFKPSYNEYR DFELQSSLAD PSDEFSSQDN QKQLRERQFT TLPLNQNTLQ  240
DVVTSGLVGR TREIILHPSF ENQSSTLHFN DPNAWIRRPN ENSHQWSCEL GLITRKSSQE  300
LRTIPNDANT QGLSLSLSSN QSSKVNETRF GEAYESECLQ SKNGLSKEPH HVSKVSKASY  360
MCPLPRPSIL SKGCGKSLHD LPGDATNILR NAGPLGPFTG YATILSSSRF LKPAQELMDE  420
FCGVKGLGLI RTSELPKRIG GEASPPALGD SVNEADTGDE ANDDNNLGAS PFTSRRSNEE  480
IGHCGVGNSS SKPYMPEYQQ MKAKLLYLQD EVLRRYKQYH QQMEMVASFF ESVAGLSAAT  540
QYISMAVKAV SGNFRSIKHC ISDQLKHVTK ALGENLFSPN TFGSRTAGSL RYKDQSFQKN  600
NSGGPNVGYL EPQEHIWRPQ RGLPERAVVI LRAWLFEHFL HPYPTDTDKH MLATQTGLSR  660
YQVSNWFINA RVRLWKPMVE EIHTLETKGL LENNRSSGKN GGNSAEGASQ PDGDHRASKE  720
LGTSYMPSKQ LECSSNIGSS GGSRDQLDAE HWNQEKRSRV ESQAPIHADR SLMNFMLYQK  780
PGSENGGLGA VSLTLGLRHG AENAQHEQLQ Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A9e-16623681563Homeobox protein Meis2
4xrm_B9e-16623681563Homeobox protein Meis2
4xrs_A7e-16623680158Homeobox protein Meis1
4xrs_B7e-16623680158Homeobox protein Meis1
5bng_A9e-16623681159Homeobox protein Meis2
5bng_B9e-16623681159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G009900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464857.10.0BEL1-like homeodomain protein 4
RefseqXP_024464858.10.0BEL1-like homeodomain protein 4
TrEMBLA0A2K1Z0U80.0A0A2K1Z0U8_POPTR; Uncharacterized protein
STRINGPOPTR_0009s01530.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34813257
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.13e-79BEL1-like homeodomain 8