PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.009G009400.1 | ||||||||
Common Name | POPTR_0009s01480g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TCP | ||||||||
Protein Properties | Length: 178aa MW: 19496.9 Da PI: 5.6758 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 99.6 | 5.4e-31 | 14 | 91 | 5 | 82 |
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssa 82 ++ +++h+kv+gRdRR+Rl+++caar+F+L++eLG ++d++tieWLl+ a+p i++ tg + + + ++ + Potri.009G009400.1 14 PKPRKDRHAKVNGRDRRIRLPVNCAARVFQLTQELGNKTDGETIEWLLRVAEPTIIAVTGKGIGTTNTIrgH--AQAARV 91 5788*********************************************************66666555321..222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.0E-28 | 17 | 97 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 23.579 | 17 | 71 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MKKASTSKTK VADPKPRKDR HAKVNGRDRR IRLPVNCAAR VFQLTQELGN KTDGETIEWL 60 LRVAEPTIIA VTGKGIGTTN TIRGHAQAAR VNTTSVSYSS DLHPLVSTGL SSPLMDPSEP 120 RYMEPIQTQG LISPNCEVSA DEPLSFPSEF DNLETNFDME FPVNDMFPSV SGNDHEE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.009G009400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002314294.3 | 1e-130 | transcription factor TCP7 | ||||
TrEMBL | A0A2K1Z0T1 | 1e-129 | A0A2K1Z0T1_POPTR; Uncharacterized protein | ||||
STRING | XP_002529440.1 | 3e-47 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 | Representative plant | OGRP922 | 14 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 1e-28 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.009G009400.1 |
Entrez Gene | 7491160 |