PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G004800.1
Common NamePOPTR_0009s01020g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 314aa    MW: 34283.4 Da    PI: 7.5582
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G004800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0017130152123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C+++F++   L  H  +H
  Potri.009G004800.1 130 YECKTCNRCFPSFQALGGHRASH 152
                         99**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.57E-8129152No hitNo description
PfamPF139122.9E-11129154IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.367130157IPR007087Zinc finger, C2H2
SMARTSM003550.14130152IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280132152IPR007087Zinc finger, C2H2
SuperFamilySSF576671.57E-8205232No hitNo description
PfamPF139121.4E-11210234IPR007087Zinc finger, C2H2
PROSITE profilePS501579.66210237IPR007087Zinc finger, C2H2
SMARTSM003550.058210232IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280212232IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MMDMEAQDEF MGSNDLTQIV KGKRTKRQRS SSPHKVATSC SSSGYGGGGG ERGVLIEEYG  60
SISSPTTSSE VCESTEEEED MANCLILLAQ GDVPPKQIHE NKGSKVEKFS ARKFSDMSAP  120
TINKAGFFVY ECKTCNRCFP SFQALGGHRA SHKRPKATAP EEKKGLVVAS MEDLDDRQLN  180
KRSPYPCLSL QIPNNNNVNK GFQANKAKIH ECSICGSEFM SGQALGGHMR RHRANTGANQ  240
VSNISTDSSS ATTESKIHGD HHHTIKPRNM LALDLNLPAP PEDDHHLRES KFQLSSTQQP  300
LVFSSPALVD CHY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.22950.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G004800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1471530.0EF147153.1 Populus trichocarpa clone WS01228_G16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313544.10.0zinc finger protein ZAT5
TrEMBLB9HQP70.0B9HQP7_POPTR; C2H2 family protein
STRINGPOPTR_0009s01020.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Representative plantOGRP23501035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.14e-57C2H2 family protein