PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G216600.1
Common NamePOPTR_0008s22660g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 1161aa    MW: 129087 Da    PI: 7.9821
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G216600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.85.8e-094681340
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                         W +eE e++++a +++G++ W+++a+ +  +R+ +++
  Potri.008G216600.1 46 QWGKEELERFYKAYRKHGKD-WEKVAAAVR-NRSVEMV 81
                        6*****************99.*********.**98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.4224293IPR017884SANT domain
SMARTSM007172.2E-54391IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-94392IPR009057Homeodomain-like
PfamPF002491.0E-74681IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-44681IPR009057Homeodomain-like
CDDcd001676.36E-64789No hitNo description
SMARTSM011358.5E-54619720IPR033471DIRP domain
PfamPF065844.1E-32619719IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1161 aa     Download sequence    Send to blast
MAPSRKRSVN KRYSNVNEVT PTKNAAVITN KSKPRKRKLS EMLGPQWGKE ELERFYKAYR  60
KHGKDWEKVA AAVRNRSVEM VEALYTMNKA YLSLPKGFAS AAGLIAMMTD HYSNLGESDS  120
EIESNGGTGT SRKSQKRARV TKGSDAPPVP DLLQSQPAAS NYGCLSLLKK RRTGSKPWAV  180
GKRTPRVPVT YSFDKYSEEK YVSPIRQSLK VKADAVDDDV AHEIALALTE ASQRGGSPQV  240
SQTPKRKTKM PSHAQHDEQM HAESEIMSAK LRGSEMEEVG CELSLGSTEA DVVDYVKDES  300
FWKGKRYYGR RPPAEDLDDN LDDVREACSG TEEGQKLDAV EELFEMEVAD TKLVRSSKGS  360
RKRSKKVLFG EVEDADFDAL EALADLSLRL PETPVDTGSS VYVEEEKTGI VAKSKLKGNP  420
SSPGVKPISF KTTKQGKVFT HNASSIPEEK DVAHQFGPVM RKRRQKHMPS KISENEEHAD  480
SYLGESQKVE VTTDDNNFMS KGKRSQYAAH SKQGKLMKSA ERTSSSNNHG RELNNSAPTT  540
IQVLSASQFN LPTKVRSSRK LNTPKMLVER DSKSSENIVN SQSNTLIPSF QDRVLGLKGK  600
LSNCLSRYLV RRWCVFEWFY SAIDYPWFSK REFVEYLEHV RLGHIPRLTR VEWGVIRSSL  660
GKPRRFSEQF LKEEKEKLNH YRESVREHYA ELRTGTREGL PTDLARPLSV GQRIIALHPR  720
TSEIHDGSIL TVDHSRCHVQ FDRPELGVEF VMDVDCMPLN PLENMPASMI GHNIALNRYM  780
KNLNELKISG QPAEKKMEGF KFSPCENLED NSAPPHTSLS TYHCSVLLQQ PMGGLGGSNS  840
QVNNGGETIN TQQATNAQPS FYAQIQAKEA DIHALSELTR ALDKKEAVVS ELKHMNDEVL  900
ESQKRGENSL KDSEAFKKHY AAVLLQLNEV NEQVSSALFF LRQRNTYQGN IPHVLSKSIP  960
NIDDPACHGS SFDSSADDTQ ESGSHVVEIV ESSRTKAQTM VDAAMQAMSS LKKEGSSIES  1020
IEDAIDFVNN KLLADDSSVP AIRSPVPASS VQDSPASQDQ LSSCVANPGA INHAPDAKWN  1080
NLSNENEVQI PSELISHCVA TLLMIQKCTE RQFPPSHVAQ VLDSAVISLK PCCSVNLPIY  1140
AEIQKFMGII KNQILALIPT *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13338PRKRKL
2459464MRKRRQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269|PubMed:15246533}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G216600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463377.10.0protein ALWAYS EARLY 3 isoform X1
SwissprotQ6A3320.0ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBLA0A2K1ZL810.0A0A2K1ZL81_POPTR; Uncharacterized protein
STRINGPOPTR_0008s22660.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17833369
Representative plantOGRP24791321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding
Publications ? help Back to Top
  1. Pfaff C, et al.
    ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development.
    Plant Physiol., 2018. 177(1): p. 226-240
    [PMID:29540591]