PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G215700.1
Common NamePOPTR_0008s22730g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 478aa    MW: 50536.4 Da    PI: 8.621
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G215700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.85.6e-115274527
                        --SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                         C++++rtG+C yG+rC+++H++
  Potri.008G215700.1 52 DCMYYLRTGFCGYGARCRYNHPR 74
                        7********************96 PP
2zf-CCCH41.32.5e-1396120327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++lC++++rtGtCk+G++Ck++H++
  Potri.008G215700.1  96 QPLCQYYMRTGTCKFGASCKYHHPK 120
                         79*********************96 PP
3zf-CCCH35.61.6e-11140166127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C ++ +tG+Ck+G++CkF+H++
  Potri.008G215700.1 140 PGERECTYYIKTGQCKFGATCKFHHPQ 166
                         5789*********************97 PP
4zf-CCCH28.42.9e-09302328127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C+++ +tG Ck+ ++C+++H+p
  Potri.008G215700.1 302 PGQPECQYYIKTGDCKFRSSCRYHHPP 328
                         5789*********************97 PP
5zf-CCCH29.11.7e-09351374427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         + C+++ + G+Ck+G+ CkF H++
  Potri.008G215700.1 351 PTCSHYTQRGQCKFGPACKFDHPM 374
                         78********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.1364775IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-64774IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-65076IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-85174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-55374IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.14593121IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-793120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-696120IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-1196120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-598119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.934139167IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4139166IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-8141166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6142167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4145165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483301329IPR000571Zinc finger, CCCH-type
SMARTSM003560.0031301328IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-4303328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-5305328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.324347375IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-6347374IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5351377IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-7351374IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4353372IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MDRYSRGQEG SQSDPALEWT GSGPETGLEE GVWQLGLGET ESEYPERSNE QDCMYYLRTG  60
FCGYGARCRY NHPRDRNAVL GAARAGGAEY PERAGQPLCQ YYMRTGTCKF GASCKYHHPK  120
QGGGSASPVS LNYYGYPLRP GERECTYYIK TGQCKFGATC KFHHPQPGNI QIPAQSLAPQ  180
IAPVPGPTLY PSVQSPSVPS SQQYGVMVAR PPLLPGSYVQ GPYGPVLLSP SVVPYPSWNP  240
YPAPVSPVAS PNTQPAVGSG SVYGMSALSP SAPAYTGAFQ SIPPATGPSS STQKEHLFPE  300
RPGQPECQYY IKTGDCKFRS SCRYHHPPEL VVSKSNVVLS PIGLPLRPGA PTCSHYTQRG  360
QCKFGPACKF DHPMGTLSYS PSASSLADMP VAPYLVGSSI GTLAPSSSSS DLRSKPISGP  420
SKDSSSTRLS TSTPSGSVGS IFSKSGPAPH LNVQQSGWSS GPSTTSSSSS SGTRTSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G215700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826690.0AC182669.2 Populus trichocarpa clone Pop1-21I14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380188.10.0zinc finger CCCH domain-containing protein 34
SwissprotQ6NPN31e-162C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLB9N5000.0B9N500_POPTR; Uncharacterized protein
STRINGcassava4.1_006608m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Representative plantOGRP28651131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-136C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]