PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.008G210900.2 | ||||||||
Common Name | POPTR_0008s23260g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 253aa MW: 28900.3 Da PI: 8.1824 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.7 | 9.2e-21 | 93 | 143 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+G+r++ +g+W+AeIrdp + +r++lg++ taeeAaka+++a+k+++g Potri.008G210900.2 93 SVYRGIRQRT-WGKWAAEIRDPH----KgARVWLGTYNTAEEAAKAYDEAAKRIRG 143 78*****999.**********72....35************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.9E-14 | 93 | 143 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-22 | 93 | 152 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.13E-30 | 93 | 151 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.1E-32 | 94 | 152 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.1E-36 | 94 | 157 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.393 | 94 | 151 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-11 | 95 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-11 | 117 | 133 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MCGGAIISDF VTVKRGRRLT VEDLWSELDP FSEFLRFDYH SNDNNGSKKD PSNLLFPQKP 60 SYTIQVQQEK VEKPSHATEK ENGNKKAQRT RKSVYRGIRQ RTWGKWAAEI RDPHKGARVW 120 LGTYNTAEEA AKAYDEAAKR IRGDKAKLNF PSQTPPTPEA PPPAKKRCIV APETAYVASP 180 FTPPLQEPYS GYQNEDYELE EQILKLESFL GLEPDQMAAR LRENGGDNRD SGDLWMLDDL 240 VTHHQYRRQI NY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 95 | 154 | 3 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-21 | 95 | 151 | 6 | 63 | ATERF1 |
3gcc_A | 2e-21 | 95 | 151 | 6 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.12125 | 0.0 | bud |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.008G210900.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006380240.1 | 1e-178 | ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | U5G9D1 | 1e-177 | U5G9D1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s23260.1 | 1e-178 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 9e-46 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.008G210900.2 |
Entrez Gene | 18101897 |