PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G181000.4
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARR-B
Protein Properties Length: 552aa    MW: 61806.7 Da    PI: 5.6966
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G181000.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like24.94.6e-08157181125
             G2-like   1 kprlrWtpeLHerFveaveqLGGse 25 
                         k+r++W+ +LH++Fv+av+q+G   
  Potri.008G181000.4 157 KARVVWSVDLHQKFVKAVNQIGFDT 181
                         68*******************7554 PP
2G2-like38.42.8e-122012282855
             G2-like  28 tPktilelmkvkgLtlehvkSHLQkYRl 55 
                          Pk+il++m+v+ Lt+e+v+SHLQkYRl
  Potri.008G181000.4 201 GPKKILDMMNVPWLTRENVASHLQKYRL 228
                         5**************************8 PP
3Response_reg54.85.3e-1978532109
                         HHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
        Response_reg  32 geealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                         +++al+ll+e++  +D+++ D+ mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga d+l Kp+ ++el++
  Potri.008G181000.4   7 ARDALNLLRERKggYDIVISDVYMPDMDGFKLLEQVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRN 85 
                         6899****999999**********************6644.8***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011031.984191IPR001789Signal transduction response regulator, receiver domain
SMARTSM004482.2E-4187IPR001789Signal transduction response regulator, receiver domain
PIRSFPIRSF0363922.8E-1151491IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23004.8E-302106No hitNo description
CDDcd001564.41E-20291No hitNo description
SuperFamilySSF521723.7E-237106IPR011006CheY-like superfamily
PfamPF000721.3E-15786IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466893.23E-13155232IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-25155233IPR009057Homeodomain-like
PfamPF002493.9E-6159227IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.9E-10200228IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MTTCGLARDA LNLLRERKGG YDIVISDVYM PDMDGFKLLE QVGLEMDLPV IMMSVDGETS  60
RVMKGVQHGA CDYLLKPIRM KELRNIWQHV FRKKIHEVRD IETLERVESF QMTRNGSDQY  120
EDGHVLCGED LTSIKKRKHI ESKHDEKDTG DSISTKKARV VWSVDLHQKF VKAVNQIGFD  180
TTSLPSFDGA MTGSVCLAEV GPKKILDMMN VPWLTRENVA SHLQKYRLYL SRLQKENDFK  240
NPAGGIKQSD SPLRDSAGSF GSQNSINLQH NDVSNGSYRF SGSSLVVHNG DPRSHDSDRK  300
RLVSTPVEEP KRTLTVNVPN PCIPRSSQME FGHPLAPPQS EVDFGALDST FPTKYPWCGI  360
PEIQLKKEHN PLHLNDEFSH LPLPGQKQLT QADYPQPAPA ISSAPSLTPS HNEYRSNVNH  420
ASSTAIAVDS SPIQTKTNVA NHQAIELISK STPSLENQGF NMNSITEFES SRKNINLGML  480
PFTTLEEDLQ VCWVPGDCYM NLGLQNIEVL EYFDPGLITD VPVNLNDGLR FDYEFNDPTE  540
YSLIDQSLFI A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G181000.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN9081450.0FN908145.1 Populus x canadensis mRNA for putative B-type response regulator 14 (rr14 gene), cultivar Dorskamp.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463385.10.0two-component response regulator ARR11 isoform X4
RefseqXP_024463386.10.0two-component response regulator ARR11 isoform X4
TrEMBLA0A2K1ZJ950.0A0A2K1ZJ95_POPTR; Two-component response regulator
STRINGPOPTR_0008s18130.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-104response regulator 11