PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G181000.1
Common NamePOPTR_0008s18130g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARR-B
Protein Properties Length: 644aa    MW: 72475.2 Da    PI: 5.8973
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G181000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like24.65.5e-08249273125
             G2-like   1 kprlrWtpeLHerFveaveqLGGse 25 
                         k+r++W+ +LH++Fv+av+q+G   
  Potri.008G181000.1 249 KARVVWSVDLHQKFVKAVNQIGFDT 273
                         68*******************7554 PP
2G2-like38.13.3e-122933202855
             G2-like  28 tPktilelmkvkgLtlehvkSHLQkYRl 55 
                          Pk+il++m+v+ Lt+e+v+SHLQkYRl
  Potri.008G181000.1 293 GPKKILDMMNVPWLTRENVASHLQKYRL 320
                         5**************************8 PP
3Response_reg493.3e-172195175
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEE CS
        Response_reg  1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpii 75
                        vl+vdD+p+ +++l+++l+k  y ev+++  +++al+ll+e++  +D+++ D+ mp+mdG++ll++   e  +lp+i
  Potri.008G181000.1 21 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLARDALNLLRERKggYDIVISDVYMPDMDGFKLLEQVGLEM-DLPVI 95
                        89*********************.***************999999*******************9984433.56665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521729.82E-211895IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.8E-401895No hitNo description
SMARTSM004481.3E-2119179IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011036.37220183IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-132195IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.97E-2222183No hitNo description
SuperFamilySSF521726.69E-7142198IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.8E-40144198No hitNo description
Gene3DG3DSA:1.10.10.606.6E-25247325IPR009057Homeodomain-like
SuperFamilySSF466894.12E-13247324IPR009057Homeodomain-like
PfamPF002494.8E-6251319IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.5E-10292320IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MMENNGFSSP RNDSFPAGLR VLVVDDDPTW LKILEKMLKK CSYEVTTCGL ARDALNLLRE  60
RKGGYDIVIS DVYMPDMDGF KLLEQVGLEM DLPVISRFFS LTLEFYFNAN IFYLRIHIPM  120
SCLHYIYIGI LIQLLTSCAC QLTVMSVDGE TSRVMKGVQH GACDYLLKPI RMKELRNIWQ  180
HVFRKKIHEV RDIETLERVE SFQMTRNGSD QYEDGHVLCG EDLTSIKKRK HIESKHDEKD  240
TGDSISTKKA RVVWSVDLHQ KFVKAVNQIG FDTTSLPSFD GAMTGSVCLA EVGPKKILDM  300
MNVPWLTREN VASHLQKYRL YLSRLQKEND FKNPAGGIKQ SDSPLRDSAG SFGSQNSINL  360
QHNDVSNGSY RFSGSSLVVH NGDPRSHDSD RKRLVSTPVE EPKRTLTVNV PNPCIPRSSQ  420
MEFGHPLAPP QSEVDFGALD STFPTKYPWC GIPEIQLKKE HNPLHLNDEF SHLPLPGQKQ  480
LTQADYPQPA PAISSAPSLT PSHNEYRSNV NHASSTAIAV DSSPIQTKTN VANHQAIELI  540
SKSTPSLENQ GFNMNSITEF ESSRKNINLG MLPFTTLEED LQVCWVPGDC YMNLGLQNIE  600
VLEYFDPGLI TDVPVNLNDG LRFDYEFNDP TEYSLIDQSL FIA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G181000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN9081450.0FN908145.1 Populus x canadensis mRNA for putative B-type response regulator 14 (rr14 gene), cultivar Dorskamp.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463381.10.0two-component response regulator ARR11 isoform X1
TrEMBLA0A2K1ZJ940.0A0A2K1ZJ94_POPTR; Two-component response regulator
STRINGPOPTR_0008s18130.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-118response regulator 11